Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FOB88_RS20340 Genome accession   NZ_CP054912
Coordinates   3630744..3632126 (+) Length   460 a.a.
NCBI ID   WP_013024514.1    Uniprot ID   D4GJH6
Organism   Pantoea ananatis strain FDAARGOS_680     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3625744..3637126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB88_RS20310 (FOB88_20315) rsmC 3626189..3627220 (-) 1032 WP_176018716.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -
  FOB88_RS20315 (FOB88_20320) - 3627326..3627736 (+) 411 WP_013024509.1 DNA polymerase III subunit psi -
  FOB88_RS20320 (FOB88_20325) rimI 3627708..3628148 (+) 441 WP_014606647.1 ribosomal protein S18-alanine N-acetyltransferase -
  FOB88_RS20325 (FOB88_20330) yjjG 3628168..3628848 (+) 681 WP_014606646.1 pyrimidine 5'-nucleotidase -
  FOB88_RS20330 (FOB88_20335) - 3628977..3629645 (-) 669 WP_013024512.1 YtjB family periplasmic protein -
  FOB88_RS20335 (FOB88_20340) serB 3629753..3630730 (+) 978 WP_176018717.1 phosphoserine phosphatase -
  FOB88_RS20340 (FOB88_20345) radA 3630744..3632126 (+) 1383 WP_013024514.1 DNA repair protein RadA Machinery gene
  FOB88_RS20345 (FOB88_20350) nadR 3632219..3633457 (+) 1239 WP_014595284.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  FOB88_RS20350 (FOB88_20355) - 3633786..3634718 (+) 933 WP_176018718.1 winged helix-turn-helix domain-containing protein -
  FOB88_RS20355 (FOB88_20360) - 3634715..3635164 (+) 450 WP_022622279.1 hypothetical protein -
  FOB88_RS20360 (FOB88_20365) - 3635407..3635961 (+) 555 WP_176018719.1 fimbrial protein -
  FOB88_RS20365 (FOB88_20370) - 3636001..3636690 (+) 690 WP_176018720.1 molecular chaperone -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49450.09 Da        Isoelectric Point: 7.6663

>NTDB_id=455295 FOB88_RS20340 WP_013024514.1 3630744..3632126(+) (radA) [Pantoea ananatis strain FDAARGOS_680]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQVMCRLAQNMKTLYVTGEESLQQVAMRAHRLGLPTENLNMLSETSIE
QICLIAEQEAPQIMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPAGNAPKKPIEGMRVYSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=455295 FOB88_RS20340 WP_013024514.1 3630744..3632126(+) (radA) [Pantoea ananatis strain FDAARGOS_680]
TTGGCCAAAGCGGCAAAACGCGCATTTGTTTGTAACGAGTGTGGCGCAGATTATCCGCGCTGGCAGGGGCAATGCAGCGC
CTGTCACGCCTGGAACACCATTACCGAGGTACGGATTGCCGCCTCACCCGCTGCAGCGCGCAATGAGCGCCTCAGCGGTT
ATGCGGGCAGTGCCGGGACCAGTCGGGTGCAAAAGCTGTCCGAAATCAGCCTGGAAGCCTTGCCCCGTTTCTCGACCAGC
TTTAAAGAATTTGACCGTGTGCTGGGCGGTGGCGTGGTGCCCGGCAGTGCCATTCTGATTGGTGGTAATCCCGGGGCCGG
TAAATCCACTTTGTTGCTGCAGGTCATGTGCCGCTTAGCGCAGAACATGAAAACGCTGTATGTCACCGGCGAAGAATCCT
TACAACAGGTGGCAATGCGCGCCCATCGGCTGGGTTTGCCGACTGAAAACCTGAACATGCTGTCGGAAACCAGCATCGAA
CAGATCTGCCTGATCGCCGAGCAGGAAGCGCCGCAAATCATGGTCATCGACTCCATCCAGGTGATGCACATGGCCGATAT
CCAGTCTTCACCCGGCAGCGTCGCCCAGGTGCGCGAAACCGCCGCTTATCTGACGCGCTTTGCCAAAACCCGCGGCGTGG
CGATTATCATGGTGGGCCATGTCACCAAAGACGGATCGCTGGCCGGGCCGAAGGTCCTTGAGCACTGTATCGACTGTTCG
GTGCTGCTGGATGGCGATGCCGATTCGCGCTTCCGCACCTTACGCAGCCATAAAAACCGTTTTGGTGCCGTGAATGAACT
GGGGGTTTTTGCCATGACGGAGCAGGGCATGCGTGAGGTGAGCAATCCTTCCGCCATTTTCCTGTCGCGCGGTGAAGAGA
TTACGTCGGGCAGTTCGGTCATGGTGCTGTGGGAAGGAACCCGGCCATTGCTGGTCGAGATTCAGGCGCTGGTGGACCAT
TCGATGATGGGGAATCCCCGTCGTGTTGCCGTCGGGCTTGAACAAAACCGCCTGGCGATTCTGCTGGCGGTACTGCATCG
TCACGGTGGATTGCAAATGGCGGATCAGGATGTGTTCGTCAACGTCGTGGGCGGCGTGAAAGTCACAGAAACCAGCGCCG
ACCTGGCGCTGATGCTGTCAATGGTTTCCAGCCTGCGCGATCGCCCCTTGCCGCAGGATCTGGTTATCTTTGGCGAAGTC
GGGCTGGCCGGCGAAATTCGCCCGGTGCCCAGCGGCCAGGAACGGATTTCAGAAGCGGCTAAACATGGCTTCAAACGGGC
GATTGTGCCTGCCGGTAACGCGCCGAAAAAGCCGATTGAGGGCATGCGCGTCTACAGCGCGAAAAAGTTGGCGGATGCGC
TGGCGATTCTCGATGATCTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(87-225)

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D4GJH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.59

100

0.487
  radA Streptococcus mitis NCTC 12261

43.516

98.913

0.43
  radA Streptococcus pneumoniae Rx1

44.78

93.696

0.42
  radA Streptococcus pneumoniae D39

44.78

93.696

0.42
  radA Streptococcus pneumoniae R6

44.78

93.696

0.42
  radA Streptococcus pneumoniae TIGR4

44.78

93.696

0.42
  radA Streptococcus mitis SK321

44.78

93.696

0.42