Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   JFL49_RS06665 Genome accession   NZ_CP066558
Coordinates   1437525..1440356 (-) Length   943 a.a.
NCBI ID   WP_075293717.1    Uniprot ID   A0A9Q6YZF4
Organism   Histophilus somni strain ASc-MMNZ-VFA-070     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1432525..1445356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL49_RS06645 (JFL49_06645) - 1433973..1434647 (+) 675 WP_075319959.1 SPOR domain-containing protein -
  JFL49_RS06650 (JFL49_06650) mreD 1434673..1435161 (-) 489 WP_011609280.1 rod shape-determining protein MreD -
  JFL49_RS06655 (JFL49_06655) mreC 1435161..1436216 (-) 1056 WP_075293718.1 rod shape-determining protein MreC -
  JFL49_RS06660 (JFL49_06660) - 1436298..1437353 (-) 1056 WP_011609282.1 rod shape-determining protein -
  JFL49_RS06665 (JFL49_06665) uvrA 1437525..1440356 (-) 2832 WP_075293717.1 excinuclease ABC subunit UvrA Machinery gene
  JFL49_RS06670 (JFL49_06670) ssb 1440535..1440999 (+) 465 WP_011609284.1 single-stranded DNA-binding protein Machinery gene
  JFL49_RS06675 (JFL49_06675) metF 1441086..1441971 (-) 886 Protein_1307 methylenetetrahydrofolate reductase -
  JFL49_RS06680 (JFL49_06680) - 1442187..1442705 (-) 519 WP_075293952.1 ClbS/DfsB family four-helix bundle protein -
  JFL49_RS06685 (JFL49_06685) nagZ 1442725..1443780 (-) 1056 WP_075293715.1 beta-N-acetylhexosaminidase -
  JFL49_RS06690 (JFL49_06690) - 1443787..1444143 (-) 357 WP_075293714.1 YcfL family protein -
  JFL49_RS06695 (JFL49_06695) hinT 1444143..1444493 (-) 351 WP_075293713.1 purine nucleoside phosphoramidase -

Sequence

Protein


Download         Length: 943 a.a.        Molecular weight: 104340.32 Da        Isoelectric Point: 6.9074

>NTDB_id=455262 JFL49_RS06665 WP_075293717.1 1437525..1440356(-) (uvrA) [Histophilus somni strain ASc-MMNZ-VFA-070]
MEKIDIRGARTHNLKNISLTIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS
PAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPEHHVTLSVQTISQMVDKVLSLPEESKMMLLAPVVKNRKG
EHIKILENIAAQGYIRARIDGEICDLSDPPKLELQKKHTIEVVVDRFKVRSDLATRLAESFETALELSGGTAIVADMENS
QVEELIFSANFACPHCGYSIPELEPRLFSFNNPAGACSTCDGLGVQQYFDEKRVVQNASISLAGGAIKGWDRRNFYYYQM
LMSLAKHYDFDIELPFEKLPKKIQQIILNGSGNEEIEFQYMNDRGDVVLRRHSFEGILNNMARRYKETESMSVREELSKN
ISSRPCVDCCGSRLRSEARHVYIGEANLPDVSEKSIGEALNFIDNLTLTGQRGQIADKILKEIKERLQFLVNVGLSYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLLHLRNLGNTVIVVEHDEDAIMAADHIIDI
GPGAGVHGGNVVAQGNAQEIMANPNSLTGKFLSGKEKIEIPLKRTAVDKQKMLRLKGASGNNLKQVNLDIPVGLFTCVTG
VSGSGKSTLINDTLFPLAQNALNRAENSQFAPYQSIEGLEFFDKVIDIDQSPIGRTPRSNPATYTGLFTPIRELFSGVPE
ARARGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDQCKGKRYNRETLEIRYKGKTIHQVLDMTVEEARVFF
DAIPMVARKLQTLIDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILDEPTTGLHFADIKQLLTVLHCLRD
KGNTIVVIEHNLDVIKTADWIVDLGPEGGNGGGQIIATGTPEEVCLVEGSHTARFLKTMLAKK

Nucleotide


Download         Length: 2832 bp        

>NTDB_id=455262 JFL49_RS06665 WP_075293717.1 1437525..1440356(-) (uvrA) [Histophilus somni strain ASc-MMNZ-VFA-070]
ATGGAAAAAATTGATATTCGTGGGGCAAGAACTCACAATCTAAAAAATATAAGTTTAACAATTCCTCGTAACAAACTTGT
TGTAATTACGGGGCTGTCTGGTTCAGGAAAGTCTTCTTTGGCTTTTGATACGTTATATGCAGAGGGGCAACGCCGTTATG
TAGAGTCATTGTCTGCCTACGCTCGCCAATTTTTATCTTTAATGGAAAAACCCGATGTTGATCATATTGAAGGATTATCT
CCGGCTATTTCTATTGAACAAAAATCCACTTCTCATAATCCTCGCTCAACAGTGGGAACGATTACTGAAATTCATGATTA
TTTGCGTTTATTGTTTGCTCGAGTAGGTGAGCCGAGATGCCCAGAACATCATGTTACATTAAGCGTGCAAACTATTAGCC
AAATGGTTGATAAAGTACTGAGTTTGCCGGAAGAAAGTAAGATGATGTTACTTGCACCGGTGGTCAAAAATCGTAAAGGC
GAGCATATCAAAATTTTAGAAAATATTGCCGCACAAGGCTATATTCGGGCAAGGATTGATGGTGAAATTTGCGATTTATC
GGATCCGCCTAAATTAGAATTACAGAAAAAACATACAATTGAAGTGGTGGTTGATCGCTTTAAAGTGCGGTCTGATTTGG
CTACTCGTTTGGCTGAATCTTTTGAAACAGCGTTAGAGTTGTCCGGTGGGACAGCAATCGTTGCGGATATGGAGAATTCG
CAAGTGGAAGAATTGATTTTTTCCGCTAATTTTGCTTGCCCTCATTGTGGTTATTCTATCCCTGAATTAGAGCCGAGGTT
GTTTTCTTTTAATAATCCTGCCGGTGCTTGTTCTACTTGTGACGGTTTAGGCGTGCAACAATATTTTGATGAAAAACGTG
TTGTACAAAACGCATCGATTTCTTTAGCCGGTGGAGCGATAAAAGGGTGGGATCGGCGTAATTTTTATTATTACCAAATG
TTGATGTCTTTAGCTAAGCACTATGATTTTGATATTGAACTACCTTTTGAAAAGTTACCGAAAAAAATTCAGCAAATTAT
CTTAAACGGTTCAGGTAACGAGGAAATTGAATTTCAATATATGAACGATCGTGGTGATGTTGTTCTTCGCCGTCATAGTT
TTGAGGGGATTCTCAATAATATGGCTCGCCGTTATAAAGAAACCGAATCTATGTCTGTACGAGAGGAATTGTCCAAAAAT
ATTAGTAGTCGACCTTGTGTAGATTGTTGTGGTTCGAGATTACGTTCGGAAGCTCGCCATGTTTATATCGGTGAAGCTAA
TTTACCTGATGTATCGGAGAAAAGTATCGGAGAAGCACTCAATTTTATTGATAACCTGACATTGACGGGACAACGTGGGC
AAATTGCAGACAAAATTCTGAAAGAGATTAAAGAGCGGTTACAATTTTTAGTGAATGTGGGGCTGAGTTATTTATCTTTA
TCTCGTTCAGCGGAAACTTTATCCGGTGGAGAAGCACAGCGTATTCGTTTGGCAAGTCAAATTGGTGCAGGACTAGTTGG
AGTAATGTATGTACTTGATGAACCCTCAATCGGTTTACACCAACGAGATAATGAGCGTTTATTAAATACTTTGTTGCATT
TGCGTAATCTAGGCAACACAGTGATTGTGGTTGAACATGATGAAGATGCTATCATGGCAGCTGATCATATTATTGATATT
GGTCCCGGAGCCGGTGTGCATGGAGGAAATGTTGTTGCACAAGGTAATGCACAAGAAATTATGGCTAATCCAAATTCTTT
AACAGGTAAATTCTTGTCAGGTAAGGAAAAAATTGAAATTCCGCTGAAACGAACCGCAGTTGATAAGCAAAAAATGCTTA
GATTAAAAGGAGCAAGCGGTAATAACCTGAAACAGGTGAATTTGGATATTCCCGTTGGTTTATTTACCTGTGTAACAGGT
GTATCCGGTTCGGGAAAATCTACCTTAATCAATGATACTTTATTTCCATTGGCTCAAAATGCGTTAAATCGTGCGGAAAA
TTCCCAGTTTGCACCTTATCAATCAATTGAGGGACTTGAGTTTTTTGACAAAGTGATCGATATAGATCAAAGTCCGATAG
GTAGAACGCCTCGTTCTAATCCAGCGACTTATACAGGACTATTTACGCCAATTCGTGAATTATTTTCCGGCGTGCCGGAG
GCTCGAGCGAGAGGTTATAATCCGGGGAGATTCAGTTTTAATGTGCGTGGCGGACGTTGTGAAGCCTGTCAAGGTGATGG
TGTTATCAAGGTTGAAATGCACTTTTTACCTGATGTTTATGTGCCTTGTGATCAATGTAAAGGCAAGCGTTATAATCGAG
AAACCTTGGAAATTCGTTACAAAGGCAAAACTATCCATCAAGTGCTTGATATGACAGTAGAAGAAGCACGAGTGTTTTTT
GATGCTATTCCAATGGTAGCTCGTAAATTACAAACGTTGATTGACGTTGGTTTATCTTATATTCGCTTAGGTCAATCTTC
AACAACCTTGTCTGGAGGAGAAGCACAAAGAGTTAAATTAGCAACAGAGCTTTCTAAACGAGATACAGGGAAGACGTTAT
ACATTTTAGATGAACCGACTACAGGATTACATTTTGCCGATATTAAACAACTCCTGACCGTCTTACATTGTTTACGTGAT
AAGGGAAATACCATAGTGGTAATTGAACATAATCTCGATGTAATAAAAACCGCTGACTGGATCGTTGATTTAGGACCGGA
AGGGGGAAATGGCGGAGGACAAATTATTGCTACCGGCACGCCGGAAGAGGTTTGCCTAGTTGAAGGATCTCATACGGCGA
GATTTTTAAAAACTATGTTGGCTAAAAAATAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6YZF4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.946

100

0.569
  uvrA Streptococcus pneumoniae TIGR4

56.946

100

0.569
  uvrA Streptococcus pneumoniae D39

56.946

100

0.569