Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JFL49_RS05355 Genome accession   NZ_CP066558
Coordinates   1129317..1130747 (-) Length   476 a.a.
NCBI ID   WP_075293871.1    Uniprot ID   A0A9Q6YYZ2
Organism   Histophilus somni strain ASc-MMNZ-VFA-070     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1124317..1135747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JFL49_RS05320 (JFL49_05320) infC 1125228..1125770 (+) 543 WP_075293873.1 translation initiation factor IF-3 -
  JFL49_RS05325 (JFL49_05325) rpmI 1125869..1126066 (+) 198 WP_011609029.1 50S ribosomal protein L35 -
  JFL49_RS05330 (JFL49_05330) rplT 1126137..1126490 (+) 354 WP_011609028.1 50S ribosomal protein L20 -
  JFL49_RS05335 (JFL49_05335) - 1126663..1127268 (-) 606 WP_075293872.1 DedA family protein -
  JFL49_RS05340 (JFL49_05340) rplY 1127489..1127776 (+) 288 WP_011609026.1 50S ribosomal protein L25 -
  JFL49_RS05345 (JFL49_05345) - 1128337..1128498 (-) 162 WP_157666563.1 hypothetical protein -
  JFL49_RS05350 (JFL49_05350) - 1128787..1129206 (-) 420 WP_012340506.1 hypothetical protein -
  JFL49_RS05355 (JFL49_05355) sbcB 1129317..1130747 (-) 1431 WP_075293871.1 exodeoxyribonuclease I Machinery gene
  JFL49_RS05360 (JFL49_05360) - 1130790..1133846 (-) 3057 WP_075293870.1 type I restriction endonuclease subunit R -
  JFL49_RS05365 (JFL49_05365) - 1133976..1134500 (-) 525 WP_075293869.1 transposase -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 55711.37 Da        Isoelectric Point: 5.6753

>NTDB_id=455252 JFL49_RS05355 WP_075293871.1 1129317..1130747(-) (sbcB) [Histophilus somni strain ASc-MMNZ-VFA-070]
MQNDFSFFIYDYESFGINPATDRPAQFAGIRTDQDFNIIGEPVMFYCKQTDDYLPSPESVLVTGITPQICNEKGIPEPEF
AEKVLAEFSQPNTCIMGYNNVRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLIDVVRACYALRPDGINWAYDDDGMPSF
RLEKLTQVNDIEHGNAHDAMADVYATIAMAKLIKQKQPKLFQFFFENRGKREVEKLIDIANMKPLVHVSGMLGNYRGNTS
WVVPLAWHPINQNAVIVCDLAKDIDDLLAKSAVELRQNLYTPKVELEQHNILPVPLKLVHINKCPILAPAKTLLPENATK
LGIDREFCLQNLQKLRQSPDIRDKVIEIFHDEREVIHSDNVETELYKQFFSNNDKNNMTILRQLSPEKLNEHNLSFSDKR
ISDLLFHYRARHFYKTLDRSEQIKWQKYRQRKLEKSAVQFEESLQRLVEEYQNNPEKLLLLQQVYEYGATLLSKLY

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=455252 JFL49_RS05355 WP_075293871.1 1129317..1130747(-) (sbcB) [Histophilus somni strain ASc-MMNZ-VFA-070]
ATGCAAAATGATTTCAGTTTTTTTATCTACGATTACGAAAGTTTTGGGATTAATCCTGCCACTGACAGACCGGCTCAATT
CGCCGGTATTCGTACAGATCAAGATTTTAATATTATTGGCGAGCCTGTAATGTTTTATTGTAAGCAAACCGATGATTATT
TACCGTCGCCGGAATCAGTTTTGGTAACCGGTATTACACCGCAAATTTGTAATGAGAAAGGTATTCCCGAACCGGAATTC
GCAGAGAAAGTTTTAGCTGAATTTAGTCAACCCAACACTTGTATTATGGGGTATAACAATGTCCGTTATGACGATGAGAT
GACACGTTATACCTTTTATCGTAACTTTATTGATCCCTATGAATACAGTTGGAAAAACGGCAATTCTCGCTGGGATTTAA
TAGATGTAGTCCGAGCTTGTTACGCTTTACGTCCGGATGGAATAAATTGGGCTTACGATGATGATGGAATGCCGAGTTTT
CGTTTGGAAAAATTAACACAAGTAAATGATATAGAGCATGGTAATGCTCACGATGCAATGGCTGACGTCTATGCCACGAT
TGCAATGGCAAAATTGATTAAACAAAAACAACCAAAACTTTTTCAATTTTTCTTTGAAAATAGAGGAAAGAGGGAAGTTG
AGAAGTTGATTGATATCGCTAATATGAAACCTTTAGTACATGTATCAGGCATGTTGGGTAATTATCGAGGTAATACCAGC
TGGGTTGTGCCATTAGCTTGGCATCCTATAAATCAGAATGCTGTTATTGTTTGTGATTTAGCAAAGGATATTGATGACTT
ATTGGCTAAAAGTGCGGTCGAATTACGTCAAAATTTGTATACACCAAAAGTTGAATTGGAACAACATAATATTTTACCTG
TACCACTTAAATTAGTGCATATTAATAAATGTCCTATTCTTGCTCCTGCAAAAACATTATTGCCGGAAAATGCAACCAAA
TTGGGAATTGATCGAGAATTCTGTTTGCAAAATTTGCAAAAACTGCGTCAATCTCCAGATATTCGAGATAAGGTCATTGA
AATTTTCCATGATGAAAGAGAAGTAATACACAGTGATAATGTAGAAACTGAATTATATAAGCAATTTTTCAGTAATAATG
ATAAAAACAATATGACGATTTTGCGTCAATTATCTCCGGAGAAATTAAACGAGCATAATTTATCTTTTTCAGATAAACGT
ATCTCGGATTTATTATTTCATTATCGAGCAAGACATTTCTATAAAACGCTTGATCGCTCTGAACAGATAAAATGGCAAAA
ATATCGCCAACGTAAACTAGAAAAAAGTGCGGTTCAATTTGAGGAAAGTTTACAACGTCTAGTAGAAGAGTATCAAAATA
ATCCTGAAAAATTATTGTTGTTACAACAAGTATATGAATATGGAGCAACTTTACTTAGTAAGCTATATTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(208-469)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q6YYZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

55.844

97.059

0.542