Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   HRF38_RS06195 Genome accession   NZ_CP054875
Coordinates   1211177..1212988 (-) Length   603 a.a.
NCBI ID   WP_020807071.1    Uniprot ID   A0AAW6XLA0
Organism   Lactobacillus gasseri strain EJL     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1206177..1217988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRF38_RS06175 - 1207021..1207680 (+) 660 WP_003649964.1 metal ABC transporter ATP-binding protein -
  HRF38_RS06180 - 1207680..1208471 (+) 792 WP_003649965.1 metal ABC transporter permease -
  HRF38_RS06185 - 1208591..1210102 (+) 1512 WP_175532650.1 L-lactate permease -
  HRF38_RS06190 - 1210246..1211118 (+) 873 WP_020807072.1 Rpn family recombination-promoting nuclease/putative transposase -
  HRF38_RS06195 pepF 1211177..1212988 (-) 1812 WP_020807071.1 oligoendopeptidase F Regulator
  HRF38_RS06200 - 1213152..1214276 (+) 1125 WP_003649969.1 LCP family protein -
  HRF38_RS06205 - 1214381..1214650 (-) 270 WP_020807069.1 hypothetical protein -
  HRF38_RS06210 - 1214873..1215265 (+) 393 WP_003649972.1 hypothetical protein -
  HRF38_RS06215 - 1215274..1216821 (+) 1548 WP_020807068.1 ABC-F family ATP-binding cassette domain-containing protein -
  HRF38_RS06220 - 1216844..1217626 (+) 783 WP_020807067.1 threonine/serine exporter family protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69038.92 Da        Isoelectric Point: 4.6562

>NTDB_id=455187 HRF38_RS06195 WP_020807071.1 1211177..1212988(-) (pepF) [Lactobacillus gasseri strain EJL]
MALPTRNEVSDDLKWDLSRVFKNNQEWEQEYKQVAQEIKNLSKFKGTLAKSGKDLYEGITAILAVNRRLEKVYVYATMSS
DVDTSNNHYLGFVAKAQSLANQMSAAIAFVDPEILSIPEETLAKFMQDEPRLENYRHRLEQITQKRPHTLPANEEKIIAD
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNVRKNAFDVMYASYGQFENSLASTLSGEVKA
HNFNARVHKYNSAREAALSENSVPTAVYDTLIKEVNSHLDLLHRYVALRKKILGLKDLQMYDMYVPLTGKPVLSYNFEEA
KEEARKALAPLGEDYLKHVDYIFNNRVIDVVENQNKVTGAYSGGAYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHETDANGQPLTA
DVLDEFYGNLNQRYYGDSVEPGGEIAMEWSRIPHFYYNFYVYQYATGFAAATALANKVVHGTEQERDAYINFLKSGSSDY
PTEIMKRAGVDMTRADYLRDAFDTFEKRLNEFEKIVDELNAEK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=455187 HRF38_RS06195 WP_020807071.1 1211177..1212988(-) (pepF) [Lactobacillus gasseri strain EJL]
ATGGCTCTTCCAACAAGAAATGAAGTATCCGATGATCTTAAGTGGGACTTAAGTCGTGTTTTTAAGAACAATCAAGAATG
GGAACAAGAATATAAGCAGGTTGCACAAGAAATCAAGAACTTAAGTAAATTTAAGGGAACACTTGCCAAATCTGGTAAAG
ATCTTTATGAAGGAATTACAGCAATTTTAGCTGTAAATCGACGCTTAGAAAAAGTATATGTTTACGCTACAATGTCAAGC
GATGTAGACACAAGCAATAATCATTACCTCGGTTTTGTTGCTAAAGCACAAAGCTTAGCTAATCAAATGAGTGCTGCAAT
TGCTTTTGTCGATCCTGAAATATTATCTATTCCAGAAGAAACCCTTGCTAAGTTTATGCAAGATGAACCACGTTTAGAAA
ATTATCGACACCGCCTTGAACAGATTACGCAAAAACGTCCTCATACCTTGCCAGCAAATGAAGAAAAAATCATTGCTGAC
GCTGGAGATGCAATGGGTACATCTGCTAATACCTTCAACGTCTTAACTAATTCTGATATGGAATATGGCTACGTCCAAGA
TGAAGACGGTGAAATGGTTCAATTATCTGACGGGCTATACTCACTTTTAATTCAATCTCAAGACCGCAACGTCCGTAAAA
ACGCCTTTGACGTGATGTATGCAAGCTACGGACAGTTTGAAAACAGTCTTGCTTCAACTTTATCAGGTGAGGTAAAAGCT
CACAATTTTAATGCTCGCGTACATAAATACAATTCGGCTAGAGAAGCTGCTTTAAGTGAAAATAGTGTACCAACAGCTGT
TTACGATACATTGATCAAGGAAGTAAATAGCCACCTTGACTTACTTCACCGTTACGTTGCATTAAGAAAGAAAATTCTAG
GCTTAAAAGACCTTCAAATGTACGATATGTACGTCCCATTAACCGGGAAGCCAGTTCTTTCTTATAACTTTGAGGAAGCA
AAAGAAGAAGCAAGAAAGGCTCTAGCACCATTAGGAGAAGACTATTTAAAACACGTTGATTATATTTTTAATAACCGCGT
AATTGATGTGGTTGAAAATCAAAACAAGGTTACTGGTGCATATTCAGGTGGTGCTTACGATACTGATCCATATGAACTAC
TTAACTGGGAAGATAACCTTGATTCACTCTACACTCTAGTTCATGAAACTGGTCACTCTGTCCACTCTTGGTACACAAGA
AACACTCAACCTTATGTCTATGGTGATTATCCAATTTTCGTTGCTGAAATTGCTTCAACTACTAATGAGAATATTTTAAC
CGAGTATTTCTTAGATAAAATTACTGATCCAAAGACCCGTGCATTTGTCTTAAACCATTATCTGGATTCGTTTAAAGGCA
CACTCTTCCGTCAAACTCAATTTGCGGAATTTGAACAATTTATTCATGAAACTGATGCTAATGGTCAGCCGCTAACAGCT
GACGTACTCGATGAATTTTATGGCAACTTAAACCAAAGATACTATGGAGATAGCGTAGAACCTGGTGGAGAAATTGCTAT
GGAATGGTCACGTATTCCTCACTTCTACTACAACTTCTATGTTTACCAATACGCAACAGGTTTTGCAGCTGCAACTGCAC
TTGCTAATAAAGTTGTCCACGGTACTGAGCAAGAACGTGATGCTTATATTAATTTCTTAAAATCAGGCTCTTCAGATTAC
CCAACGGAAATTATGAAACGAGCTGGCGTTGATATGACTAGGGCTGATTACTTGAGGGATGCTTTTGATACTTTTGAAAA
ACGTCTTAATGAATTTGAAAAAATCGTTGATGAATTAAACGCTGAAAAGTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.602

98.342

0.507