Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   JF649_RS04745 Genome accession   NZ_CP066541
Coordinates   939154..940224 (-) Length   356 a.a.
NCBI ID   WP_129321895.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain MGAS270     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 934154..945224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JF649_RS04725 (JF649_04720) citX 934755..935333 (+) 579 WP_010922331.1 citrate lyase holo-[acyl-carrier protein] synthase -
  JF649_RS04730 (JF649_04725) - 935348..936742 (+) 1395 WP_164976500.1 oxaloacetate decarboxylase subunit alpha -
  JF649_RS04735 (JF649_04730) citC 936852..937904 (-) 1053 WP_129321897.1 [citrate (pro-3S)-lyase] ligase -
  JF649_RS04740 (JF649_04735) - 937993..938475 (-) 483 WP_002984600.1 PASTA domain-containing protein -
  JF649_RS04745 (JF649_04740) xerS 939154..940224 (-) 1071 WP_129321895.1 tyrosine recombinase XerS Machinery gene
  JF649_RS04750 (JF649_04745) - 940694..941392 (+) 699 WP_002993300.1 S24 family peptidase -
  JF649_RS04755 (JF649_04750) ffh 941527..943089 (-) 1563 WP_002993302.1 signal recognition particle protein -
  JF649_RS04760 (JF649_04755) - 943104..943436 (-) 333 WP_002989745.1 putative DNA-binding protein -
  JF649_RS04765 (JF649_04760) - 943534..944232 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41499.62 Da        Isoelectric Point: 9.6262

>NTDB_id=455173 JF649_RS04745 WP_129321895.1 939154..940224(-) (xerS) [Streptococcus pyogenes strain MGAS270]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRRRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=455173 JF649_RS04745 WP_129321895.1 939154..940224(-) (xerS) [Streptococcus pyogenes strain MGAS270]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCTATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCCTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATCTAGCTGTTCGTCGGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.618

100

0.806