Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HUT26_RS06210 Genome accession   NZ_CP054868
Coordinates   1421604..1422239 (-) Length   211 a.a.
NCBI ID   WP_025804353.1    Uniprot ID   A0AAQ1FKP2
Organism   Pseudomonas chlororaphis strain PCLAR04     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1416604..1427239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT26_RS06175 (HUT26_06180) - 1416995..1417465 (-) 471 WP_025804349.1 (2Fe-2S)-binding protein -
  HUT26_RS06180 (HUT26_06185) murB 1417719..1418738 (-) 1020 WP_025804350.1 UDP-N-acetylmuramate dehydrogenase -
  HUT26_RS06185 (HUT26_06190) - 1418735..1419199 (-) 465 WP_124302558.1 low molecular weight protein-tyrosine-phosphatase -
  HUT26_RS06190 (HUT26_06195) kdsB 1419199..1419963 (-) 765 WP_124302557.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HUT26_RS06195 (HUT26_06200) - 1419960..1420145 (-) 186 WP_007931663.1 Trm112 family protein -
  HUT26_RS06200 (HUT26_06205) lpxK 1420169..1421179 (-) 1011 WP_025804352.1 tetraacyldisaccharide 4'-kinase -
  HUT26_RS06205 (HUT26_06210) - 1421179..1421607 (-) 429 WP_009047818.1 biopolymer transporter ExbD -
  HUT26_RS06210 (HUT26_06215) exbB 1421604..1422239 (-) 636 WP_025804353.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HUT26_RS06215 (HUT26_06220) comA 1422342..1424573 (-) 2232 WP_106696835.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HUT26_RS06220 (HUT26_06225) - 1424721..1425236 (+) 516 WP_124302556.1 DUF2062 domain-containing protein -
  HUT26_RS06225 (HUT26_06230) - 1425285..1426064 (-) 780 WP_124302555.1 ABC transporter permease -
  HUT26_RS06230 (HUT26_06235) - 1426061..1426993 (-) 933 WP_025804356.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22918.08 Da        Isoelectric Point: 7.4247

>NTDB_id=455080 HUT26_RS06210 WP_025804353.1 1421604..1422239(-) (exbB) [Pseudomonas chlororaphis strain PCLAR04]
MWELVISGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=455080 HUT26_RS06210 WP_025804353.1 1421604..1422239(-) (exbB) [Pseudomonas chlororaphis strain PCLAR04]
GTGTGGGAATTGGTCATATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGCCGCGGTCGGCATCATTGC
CGAGCGCCTATGGACCCTGCGGGCCAGCCGTGTTACTCCGCCGCATCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGACAAACTCAAGGAACTGCGCGCCCATTCTCCCCTGGGGGAAATCCTCGCGGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAGGAGTGCATCGAAGAGGCGGCTGCCCGGGTCATCCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACTATTGCCGCCATGGCGCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867