Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HUT27_RS08845 Genome accession   NZ_CP054867
Coordinates   1980896..1981531 (+) Length   211 a.a.
NCBI ID   WP_009047817.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis strain PCLRT02     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1975896..1986531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT27_RS08825 (HUT27_08825) - 1976141..1977073 (+) 933 WP_150085131.1 ABC transporter ATP-binding protein -
  HUT27_RS08830 (HUT27_08830) - 1977070..1977849 (+) 780 WP_124354697.1 ABC transporter permease -
  HUT27_RS08835 (HUT27_08835) - 1977898..1978413 (-) 516 WP_124354698.1 DUF2062 domain-containing protein -
  HUT27_RS08840 (HUT27_08840) comA 1978562..1980793 (+) 2232 WP_210532781.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HUT27_RS08845 (HUT27_08845) exbB 1980896..1981531 (+) 636 WP_009047817.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HUT27_RS08850 (HUT27_08850) - 1981528..1981956 (+) 429 WP_009047818.1 biopolymer transporter ExbD -
  HUT27_RS08855 (HUT27_08855) lpxK 1981956..1982966 (+) 1011 WP_063429110.1 tetraacyldisaccharide 4'-kinase -
  HUT27_RS08860 (HUT27_08860) - 1982990..1983175 (+) 186 WP_007931663.1 Trm112 family protein -
  HUT27_RS08865 (HUT27_08865) kdsB 1983172..1983936 (+) 765 WP_009047820.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HUT27_RS08870 (HUT27_08870) - 1983936..1984400 (+) 465 WP_009047821.1 low molecular weight protein-tyrosine-phosphatase -
  HUT27_RS08875 (HUT27_08875) murB 1984397..1985416 (+) 1020 WP_009047822.1 UDP-N-acetylmuramate dehydrogenase -
  HUT27_RS08880 (HUT27_08880) - 1985665..1986135 (+) 471 WP_016702177.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22932.11 Da        Isoelectric Point: 7.4247

>NTDB_id=455059 HUT27_RS08845 WP_009047817.1 1980896..1981531(+) (exbB) [Pseudomonas chlororaphis strain PCLRT02]
MWELVISGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=455059 HUT27_RS08845 WP_009047817.1 1980896..1981531(+) (exbB) [Pseudomonas chlororaphis strain PCLRT02]
GTGTGGGAATTGGTCATATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAACGTCTGTGGACCCTGCGGGCCAGCCGCGTTACCCCGCCACATCTGTTGGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAACTGCGCGCCCATTCACCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTATCT
CAATGCCCTCGGCACCATCGCCGCCATGGCGCCGCTGTTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863