Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   VPBB_RS02665 Genome accession   NC_019955
Coordinates   572173..572901 (-) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus BB22OP     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 567173..577901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VPBB_RS02640 (VPBB_0526) trpR 567560..567871 (+) 312 WP_029825623.1 trp operon repressor -
  VPBB_RS02645 (VPBB_0527) yjjX 567920..568453 (-) 534 WP_021451172.1 inosine/xanthosine triphosphatase -
  VPBB_RS02650 (VPBB_0528) pheA 568478..569656 (-) 1179 WP_015296269.1 prephenate dehydratase -
  VPBB_RS02655 (VPBB_0529) raiA 569900..570226 (-) 327 WP_005468590.1 ribosome-associated translation inhibitor RaiA -
  VPBB_RS02660 (VPBB_0530) - 570556..572037 (-) 1482 WP_015296270.1 lytic transglycosylase F -
  VPBB_RS02665 (VPBB_0531) comL 572173..572901 (-) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  VPBB_RS02670 (VPBB_0532) rluD 573038..574015 (+) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VPBB_RS02675 (VPBB_0533) pgeF 574017..574745 (+) 729 WP_015296271.1 peptidoglycan editing factor PgeF -
  VPBB_RS02680 (VPBB_0534) clpC 574893..577466 (+) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=45504 VPBB_RS02665 WP_005460312.1 572173..572901(-) (comL) [Vibrio parahaemolyticus BB22OP]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=45504 VPBB_RS02665 WP_005460312.1 572173..572901(-) (comL) [Vibrio parahaemolyticus BB22OP]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCGACTCATGAAAAAATGGACTGGGTACT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTGGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATTGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405

Multiple sequence alignment