Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   HUI95_RS19880 Genome accession   NZ_CP054854
Coordinates   4310825..4312264 (-) Length   479 a.a.
NCBI ID   WP_126880648.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain 1706-28330     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4305825..4317264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUI95_RS19850 (HUI95_19825) - 4306100..4306840 (+) 741 WP_206865942.1 KDGP aldolase family protein -
  HUI95_RS19855 (HUI95_19830) - 4306945..4308849 (+) 1905 WP_206865943.1 PRD domain-containing protein -
  HUI95_RS19860 (HUI95_19835) npr 4308865..4309137 (-) 273 WP_005305943.1 PTS phosphocarrier protein NPr -
  HUI95_RS19865 (HUI95_19840) rapZ 4309158..4310024 (-) 867 WP_005305946.1 RNase adapter RapZ -
  HUI95_RS19870 (HUI95_19845) ptsN 4310067..4310513 (-) 447 WP_005305951.1 PTS IIA-like nitrogen regulatory protein PtsN -
  HUI95_RS19875 (HUI95_19850) hpf 4310516..4310803 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  HUI95_RS19880 (HUI95_19855) rpoN/rpoN1 4310825..4312264 (-) 1440 WP_126880648.1 RNA polymerase factor sigma-54 Machinery gene
  HUI95_RS19885 (HUI95_19860) lptB 4312330..4313055 (-) 726 WP_005305964.1 LPS export ABC transporter ATP-binding protein -
  HUI95_RS19890 (HUI95_19865) lptA 4313059..4313586 (-) 528 WP_010635928.1 lipopolysaccharide transport periplasmic protein LptA -
  HUI95_RS19895 (HUI95_19870) lptC 4313573..4314133 (-) 561 WP_010635927.1 LPS export ABC transporter periplasmic protein LptC -
  HUI95_RS19900 (HUI95_19875) kdsC 4314130..4314684 (-) 555 WP_017766397.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  HUI95_RS19905 (HUI95_19880) - 4314684..4315679 (-) 996 WP_005305976.1 KpsF/GutQ family sugar-phosphate isomerase -
  HUI95_RS19910 (HUI95_19885) mlaF 4315887..4316687 (+) 801 WP_005305979.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53862.81 Da        Isoelectric Point: 4.3584

>NTDB_id=454972 HUI95_RS19880 WP_126880648.1 4310825..4312264(-) (rpoN/rpoN1) [Aeromonas dhakensis strain 1706-28330]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENDVQETSPVDQVDVSQLDSSDAMAQDQMP
DELPVDTTWEEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLED
IQAAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAREVILEHMDLLGNRDYRTLARK
TKLRENDLKEVLDLIQQLEPRPGNGVIQSESQYVIPDVSVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=454972 HUI95_RS19880 WP_126880648.1 4310825..4312264(-) (rpoN/rpoN1) [Aeromonas dhakensis strain 1706-28330]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAAAACGACG
TTCAGGAGACCAGCCCGGTCGACCAGGTGGACGTCAGCCAGCTCGACTCCAGCGATGCCATGGCCCAGGATCAGATGCCG
GACGAACTGCCGGTGGATACCACCTGGGAAGAGGTCTACTCGGCCGGCACGGCCCAGAGCGCAGGCCCCATCCATGACGG
GGAAGACAGCGTCTATCAGGGTGAAACCACCGAGAACCTGCAGGACTACCTGTTGTGGCAGATGCGCTTGACCCCGTTCA
GCGACGTGGATGCCGCCATCGCCCTCGCCATCATAGATGCCATCGATGAATCCGGTTACCTGACGGTGTCGCTTGAGGAT
ATTCAGGCGGCGGTGAGCAGCGAGGATGTCGAGGTGGAGCTCGATGAAGTGGAGGCCGTGCTCAAGCGGGTGCAACATTT
CGATCCGGTCGGTATCGCCGCCCGCTCGGTGCAGGAGTGCCTGCTGATCCAGCTGGGCCAGTACTCACCTGATCTGCCCT
GGCTCAACGAAGCCAGGGAGGTGATCCTTGAGCACATGGATCTGCTCGGCAACCGCGATTACCGCACCTTGGCCCGCAAG
ACCAAGCTGAGAGAGAACGACCTCAAGGAGGTGCTGGATCTCATCCAGCAGCTGGAGCCGCGGCCCGGCAACGGCGTCAT
CCAGAGCGAATCCCAGTACGTGATCCCGGATGTTTCCGTGGTCAAGAAGGGCAACAAGTGGGTGGTCGAGCTCAACCCTG
ACTCGGCCCCGCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCAGACAGGCTCGCACCAGTCAGGATACCCAGTTC
ATCCGCTCCCACCTGCAGGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGTCGCAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTCTTCGAATACGGTGAAGAGGCCATGAAACCCATGGTGCTCAACGACATCGCCG
AAGCGGTGGAGATGCACGAGTCGACCATCTCGCGGGTGACTACCCAGAAGTACATGCACACGCCGCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGCCATGTAAACACCGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCGGAGAATCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.866

100

0.486