Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   JEQ25_RS07135 Genome accession   NZ_CP066380
Coordinates   1334189..1335325 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain ID-A05     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1329189..1340325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ25_RS07115 (JEQ25_07060) uxaA 1329639..1331132 (+) 1494 WP_019712454.1 altronate dehydratase family protein -
  JEQ25_RS07120 (JEQ25_07065) yjnA 1331171..1331935 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  JEQ25_RS07125 (JEQ25_07070) yjoA 1332159..1332623 (-) 465 WP_014479541.1 DinB family protein -
  JEQ25_RS07130 (JEQ25_07075) yjoB 1332772..1334043 (+) 1272 WP_003245490.1 ATPase YjoB -
  JEQ25_RS07135 (JEQ25_07080) rapC 1334189..1335325 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  JEQ25_RS07140 (JEQ25_07085) phrA 1335315..1335449 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  JEQ25_RS07145 (JEQ25_07090) yjpA 1335479..1335721 (-) 243 WP_046380953.1 YciI family protein -
  JEQ25_RS07150 (JEQ25_07095) xlyB 1335849..1336802 (+) 954 WP_046380954.1 N-acetylmuramoyl-L-alanine amidase -
  JEQ25_RS07155 (JEQ25_07100) yjqA 1336842..1337219 (-) 378 WP_014476529.1 PH domain-containing protein -
  JEQ25_RS07160 (JEQ25_07105) pghB 1337324..1337926 (+) 603 WP_015252289.1 poly-gamma-glutamate hydrolase family protein -
  JEQ25_RS07165 (JEQ25_07110) xpdC 1338003..1338839 (+) 837 WP_046380955.1 manganese catalase family protein -
  JEQ25_RS07170 (JEQ25_07115) xkdA 1338875..1339471 (-) 597 WP_019712456.1 ImmA/IrrE family metallo-endopeptidase -
  JEQ25_RS07175 (JEQ25_07120) xre 1339634..1339975 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=454854 JEQ25_RS07135 WP_015252291.1 1334189..1335325(+) (rapC) [Bacillus subtilis strain ID-A05]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=454854 JEQ25_RS07135 WP_015252291.1 1334189..1335325(+) (rapC) [Bacillus subtilis strain ID-A05]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAGGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418