Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HUK68_RS03235 Genome accession   NZ_CP054840
Coordinates   689899..690300 (+) Length   133 a.a.
NCBI ID   WP_175502894.1    Uniprot ID   A0A6N1X1T2
Organism   Comamonas antarctica strain 16-35-5     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 684899..695300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK68_RS03210 (HUK68_03210) - 685163..686434 (-) 1272 WP_175502890.1 sigma-70 family RNA polymerase sigma factor -
  HUK68_RS03215 (HUK68_03215) - 686720..687256 (+) 537 WP_175502891.1 hypothetical protein -
  HUK68_RS03220 (HUK68_03220) hemL 687314..688618 (-) 1305 WP_175502892.1 glutamate-1-semialdehyde 2,1-aminomutase -
  HUK68_RS03225 (HUK68_03225) - 688602..689585 (-) 984 WP_175502893.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  HUK68_RS03230 (HUK68_03230) - 689701..689853 (+) 153 WP_159911299.1 rubredoxin -
  HUK68_RS03235 (HUK68_03235) pilG 689899..690300 (+) 402 WP_175502894.1 response regulator Regulator
  HUK68_RS03240 (HUK68_03240) - 690300..690665 (+) 366 WP_175502895.1 response regulator -
  HUK68_RS03245 (HUK68_03245) - 690679..691206 (+) 528 WP_175502896.1 chemotaxis protein CheW -
  HUK68_RS03250 (HUK68_03250) - 691230..693449 (+) 2220 WP_175502897.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14850.09 Da        Isoelectric Point: 6.9245

>NTDB_id=454838 HUK68_RS03235 WP_175502894.1 689899..690300(+) (pilG) [Comamonas antarctica strain 16-35-5]
MTTTADAPIKVLVVDDSNTIRRSAEIFLRQGGYEVLLADDGYDALAKVNDHQPQLIFCDILMPRLDGYQTCAIIKRNARY
SDTPVVMLSSKDGVFDKARGRMVGCQEYLTKPFTKDQLLQAVRQFGKISEGAM

Nucleotide


Download         Length: 402 bp        

>NTDB_id=454838 HUK68_RS03235 WP_175502894.1 689899..690300(+) (pilG) [Comamonas antarctica strain 16-35-5]
GTGACAACAACAGCGGACGCACCCATCAAGGTGCTGGTGGTGGACGACAGCAACACCATCCGGCGCAGTGCCGAAATCTT
CCTGCGCCAGGGCGGCTATGAAGTGCTTCTGGCCGACGACGGCTATGACGCGCTGGCCAAGGTCAACGACCACCAGCCGC
AGCTGATCTTCTGCGACATCCTGATGCCCCGGCTCGATGGCTACCAGACCTGCGCCATCATCAAGCGCAATGCGCGCTAC
TCCGACACCCCGGTGGTCATGCTCTCGTCCAAGGACGGGGTCTTCGACAAGGCCCGGGGCCGCATGGTCGGCTGCCAGGA
GTATCTGACCAAACCGTTTACCAAAGACCAGTTGCTGCAGGCCGTGCGGCAGTTCGGCAAGATTTCCGAAGGAGCGATGT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N1X1T2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

59.483

87.218

0.519