Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   JEQ25_RS02410 Genome accession   NZ_CP066380
Coordinates   468418..468852 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain ID-A05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 463418..473852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEQ25_RS02380 (JEQ25_02365) ydaD 464065..464925 (+) 861 WP_038428370.1 SDR family oxidoreductase -
  JEQ25_RS02385 (JEQ25_02370) lyxE 464941..465444 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  JEQ25_RS02390 (JEQ25_02375) ydaF 465532..466083 (+) 552 WP_046380787.1 GNAT family protein -
  JEQ25_RS02395 (JEQ25_02380) ydaG 466161..466583 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  JEQ25_RS02400 (JEQ25_02385) amj 467089..467898 (+) 810 WP_032722918.1 lipid II flippase Amj -
  JEQ25_RS02405 (JEQ25_02390) ydzA 467943..468233 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  JEQ25_RS02410 (JEQ25_02395) lrpC 468418..468852 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  JEQ25_RS02415 (JEQ25_02400) topB 468917..471100 (+) 2184 WP_029317313.1 DNA topoisomerase III -
  JEQ25_RS02420 (JEQ25_02405) epsJ 471302..472390 (+) 1089 WP_003246551.1 lipoprotein -
  JEQ25_RS02425 (JEQ25_02410) epsK 472371..473222 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=454819 JEQ25_RS02410 WP_003246585.1 468418..468852(+) (lrpC) [Bacillus subtilis strain ID-A05]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=454819 JEQ25_RS02410 WP_003246585.1 468418..468852(+) (lrpC) [Bacillus subtilis strain ID-A05]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTTAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1