Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HSZ48_RS08335 Genome accession   NZ_CP054831
Coordinates   1681224..1682099 (-) Length   291 a.a.
NCBI ID   WP_011303269.1    Uniprot ID   Q49X34
Organism   Staphylococcus saprophyticus strain UTI-045     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1676224..1687099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ48_RS08320 (HSZ48_08345) xerC 1676483..1677373 (-) 891 WP_011303266.1 tyrosine recombinase XerC -
  HSZ48_RS08325 (HSZ48_08350) trmFO 1677492..1678799 (-) 1308 WP_047503612.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HSZ48_RS08330 (HSZ48_08355) topA 1678954..1681020 (-) 2067 WP_150873462.1 type I DNA topoisomerase -
  HSZ48_RS08335 (HSZ48_08360) dprA 1681224..1682099 (-) 876 WP_011303269.1 DNA-processing protein DprA Machinery gene
  HSZ48_RS08340 (HSZ48_08365) sucD 1682406..1683311 (-) 906 WP_011303270.1 succinate--CoA ligase subunit alpha -
  HSZ48_RS08345 (HSZ48_08370) sucC 1683333..1684499 (-) 1167 WP_011303271.1 ADP-forming succinate--CoA ligase subunit beta -
  HSZ48_RS08350 (HSZ48_08375) - 1684607..1685377 (-) 771 WP_175267913.1 ribonuclease HII -
  HSZ48_RS08355 (HSZ48_08380) ylqF 1685384..1686244 (-) 861 WP_069795372.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33710.41 Da        Isoelectric Point: 10.3610

>NTDB_id=454801 HSZ48_RS08335 WP_011303269.1 1681224..1682099(-) (dprA) [Staphylococcus saprophyticus strain UTI-045]
MNDLDLLKLRFAGLSTQQIHRLLRFSPSFMKYSKVDKQYILKQFLGTVKITAKNENVYRLYVTTNLEVLFKQLKAWKVHF
ITINHRLYPQLLREIYDPPLILFYRGKLTLMQSPRTLAIIGSRQATQYTWQSLQTFFPSFKKHHLTIISGLAKGADMMAH
QHALLFKLPTIAVLGFGHMHHYPKETKEIRQQIEKDGIVISEYLPLEKPKRYHFPERNRLISGLSKGIFITESAENSGTS
ITTRFALEQNRDVYVLPGTIFNKMTLGNLRSAQEGAKIVLNADDILEDFII

Nucleotide


Download         Length: 876 bp        

>NTDB_id=454801 HSZ48_RS08335 WP_011303269.1 1681224..1682099(-) (dprA) [Staphylococcus saprophyticus strain UTI-045]
ATGAACGATTTAGACCTTTTAAAGCTTCGATTTGCTGGACTATCTACACAACAAATACATCGATTATTAAGATTTTCTCC
CTCTTTTATGAAATATAGTAAGGTAGATAAACAATACATACTCAAACAATTTTTGGGAACAGTAAAAATAACTGCAAAAA
ATGAAAATGTATACCGATTATATGTGACAACTAATTTAGAAGTACTATTCAAACAATTAAAAGCATGGAAAGTTCATTTC
ATAACAATTAATCACCGTTTATATCCACAGTTATTGCGAGAAATTTATGATCCACCCCTAATCCTATTTTATCGCGGTAA
GCTCACTTTAATGCAATCTCCTCGTACCCTAGCTATTATTGGATCTAGACAAGCGACACAATATACATGGCAATCACTTC
AAACATTTTTTCCTTCATTTAAAAAACATCATTTGACGATAATATCAGGGCTTGCAAAAGGTGCAGATATGATGGCGCAT
CAACATGCTTTGTTATTTAAGTTACCTACAATTGCGGTATTAGGATTTGGACATATGCATCATTATCCGAAAGAAACTAA
AGAGATAAGACAGCAAATTGAAAAAGATGGAATAGTTATAAGTGAATATCTCCCTCTCGAAAAGCCCAAAAGATACCATT
TCCCAGAAAGGAATAGATTGATTAGTGGACTTTCTAAAGGTATCTTTATCACAGAATCTGCAGAAAATAGTGGTACAAGT
ATCACGACGCGATTTGCATTAGAACAAAATAGAGATGTGTATGTCTTACCTGGTACAATATTTAATAAAATGACATTAGG
CAATTTGCGTAGTGCTCAAGAAGGGGCGAAAATTGTATTGAATGCGGATGATATATTAGAAGATTTTATTATATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q49X34

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.338

100

0.512
  dprA Staphylococcus aureus N315

50.338

100

0.512
  dprA Lactococcus lactis subsp. cremoris KW2

38.966

99.656

0.388
  dprA Vibrio campbellii strain DS40M4

36.949

100

0.375