Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   HSZ48_RS04545 Genome accession   NZ_CP054831
Coordinates   940284..941000 (-) Length   238 a.a.
NCBI ID   WP_175267844.1    Uniprot ID   -
Organism   Staphylococcus saprophyticus strain UTI-045     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 935284..946000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSZ48_RS04525 (HSZ48_04540) - 936349..936573 (+) 225 WP_002482777.1 sulfurtransferase TusA family protein -
  HSZ48_RS04530 (HSZ48_04545) - 936719..937672 (+) 954 WP_011302725.1 LacI family DNA-binding transcriptional regulator -
  HSZ48_RS04535 (HSZ48_04550) - 937758..939242 (+) 1485 WP_175267843.1 sucrose-6-phosphate hydrolase -
  HSZ48_RS04540 (HSZ48_04555) - 939239..940207 (+) 969 WP_011302727.1 carbohydrate kinase -
  HSZ48_RS04545 (HSZ48_04560) agrA 940284..941000 (-) 717 WP_175267844.1 quorum-sensing response regulator AgrA Regulator
  HSZ48_RS04550 (HSZ48_04565) agrC 941013..942308 (-) 1296 WP_011302728.1 quorum-sensing sensor histidine kinase AgrC -
  HSZ48_RS04555 (HSZ48_04570) agrD 942334..942531 (-) 198 WP_175267845.1 cyclic lactone autoinducer peptide AgrD -
  HSZ48_RS04560 (HSZ48_04575) - 942534..943103 (-) 570 WP_011302729.1 accessory gene regulator AgrB -
  HSZ48_RS04565 (HSZ48_04580) - 943862..944647 (-) 786 WP_011302730.1 carbon-nitrogen family hydrolase -
  HSZ48_RS04570 (HSZ48_04585) - 944818..945441 (-) 624 WP_174605050.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27953.75 Da        Isoelectric Point: 5.2258

>NTDB_id=454783 HSZ48_RS04545 WP_175267844.1 940284..941000(-) (agrA) [Staphylococcus saprophyticus strain UTI-045]
MKIFICEDDERQREHMVSIINNYIMIEEKPMEIEVATANPYDILERSKNLNDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRIIDCLETSESRLKLLSKESSVETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELDQLDERFFRCHNSFVVNRHNIDSIDSKSRVVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=454783 HSZ48_RS04545 WP_175267844.1 940284..941000(-) (agrA) [Staphylococcus saprophyticus strain UTI-045]
ATGAAAATATTCATTTGTGAAGATGATGAAAGACAACGTGAGCACATGGTTTCTATTATTAATAACTACATCATGATTGA
AGAAAAGCCAATGGAAATCGAAGTTGCCACTGCTAATCCTTATGACATCTTAGAACGCTCTAAGAACCTCAATGATATTG
GGTGTTATTTTTTAGATATTCAGCTTGAAGCTGATATTAATGGTATCAAACTTGCTAGTGAGATTCGTAAACATGATCCT
GTAGGTAATATCATCTTTGTTACAAGTCACAGTGAGTTAACTTACCTAACATTTGTCTATAAGGTAGCCGCGATGGATTT
CATTTTTAAAGATGATCCAGATGAATTAAAATCAAGAATTATTGACTGTCTTGAAACTTCAGAATCAAGATTGAAGCTTC
TTTCAAAAGAAAGTAGTGTTGAAACAATTGAATTAAAACGTGGAAGTAATTCGATTTATGTCCAATATGATGATGTTATG
TTCTTTGAATCATCTACTAAATCGCATCGATTGATTGCACATCTTGATAATCGTCAAATTGAGTTTTATGGCAATTTAAA
AGAATTAGATCAACTTGATGAGCGATTTTTCAGATGTCATAATAGCTTTGTCGTCAATAGACACAATATAGATTCTATTG
ACTCTAAGTCACGTGTTGTCTATTTTAAAAATAATGAACATTGCTATGCATCTGTTAGAAATGTCAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

86.134

100

0.861