Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FNX50_RS08530 Genome accession   NZ_CP066366
Coordinates   1785855..1787282 (-) Length   475 a.a.
NCBI ID   WP_000980603.1    Uniprot ID   -
Organism   Escherichia coli strain AR Bank #0346     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1780855..1792282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNX50_RS08500 (FNX50_08505) yeeZ 1780910..1781734 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  FNX50_RS08505 (FNX50_08510) yeeY 1781780..1782709 (+) 930 WP_032258477.1 LysR substrate-binding domain-containing protein -
  FNX50_RS08510 (FNX50_08515) yoeI 1782924..1782986 (+) 63 WP_010723108.1 membrane protein YoeI -
  FNX50_RS08515 (FNX50_08520) plaP 1782976..1784334 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FNX50_RS08520 (FNX50_08525) tsuA 1784513..1785571 (+) 1059 WP_032258476.1 thiosulfate utilization transporter TsuA/YeeE -
  FNX50_RS08525 (FNX50_08530) tsuB 1785585..1785812 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FNX50_RS08530 (FNX50_08535) sbcB 1785855..1787282 (-) 1428 WP_000980603.1 exodeoxyribonuclease I Machinery gene
  FNX50_RS08535 (FNX50_08540) dacD 1787491..1788657 (+) 1167 WP_032258458.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FNX50_RS08540 (FNX50_08545) sbmC 1788776..1789249 (+) 474 WP_001105385.1 DNA gyrase inhibitor SbmC -
  FNX50_RS08545 (FNX50_08550) yeeA 1789448..1790506 (+) 1059 WP_001200892.1 FUSC family protein -
  FNX50_RS08550 (FNX50_08555) tmaR 1790678..1791007 (+) 330 WP_000450409.1 DUF496 family protein -
  FNX50_RS23890 - 1791108..1791473 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  FNX50_RS08560 (FNX50_08565) - 1791744..1792115 (-) 372 WP_001295631.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54442.73 Da        Isoelectric Point: 5.4720

>NTDB_id=454750 FNX50_RS08530 WP_000980603.1 1785855..1787282(-) (sbcB) [Escherichia coli strain AR Bank #0346]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=454750 FNX50_RS08530 WP_000980603.1 1785855..1787282(-) (sbcB) [Escherichia coli strain AR Bank #0346]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCATCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581