Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HUK78_RS25200 Genome accession   NZ_CP054794
Coordinates   5378581..5379138 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain A0002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5373581..5384138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK78_RS25180 (HUK78_25175) pilR 5374857..5376194 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  HUK78_RS25185 (HUK78_25180) thiO 5376240..5377334 (-) 1095 WP_023518092.1 glycine oxidase ThiO -
  HUK78_RS25190 (HUK78_25185) - 5377469..5377978 (+) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  HUK78_RS25195 (HUK78_25190) - 5378084..5378590 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  HUK78_RS25200 (HUK78_25195) pilV 5378581..5379138 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  HUK78_RS25205 (HUK78_25200) pilW 5379135..5379959 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  HUK78_RS25210 (HUK78_25205) pilX 5379956..5380543 (+) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  HUK78_RS25215 (HUK78_25210) pilY1 5380555..5384040 (+) 3486 WP_023518093.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=454744 HUK78_RS25200 WP_003119423.1 5378581..5379138(+) (pilV) [Pseudomonas aeruginosa strain A0002]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=454744 HUK78_RS25200 WP_003119423.1 5378581..5379138(+) (pilV) [Pseudomonas aeruginosa strain A0002]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995