Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FNX50_RS01885 Genome accession   NZ_CP066366
Coordinates   416195..416872 (-) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain AR Bank #0346     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 411195..421872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNX50_RS01870 (FNX50_01875) chiA 412562..415255 (+) 2694 WP_049254950.1 bifunctional chitinase/lysozyme -
  FNX50_RS01875 (FNX50_01880) bfd 415424..415618 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  FNX50_RS01880 (FNX50_01885) bfr 415690..416166 (+) 477 WP_000675504.1 bacterioferritin -
  FNX50_RS01885 (FNX50_01890) pilD 416195..416872 (-) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  FNX50_RS01890 (FNX50_01895) gspM 416872..417333 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  FNX50_RS01895 (FNX50_01900) gspL 417330..418493 (-) 1164 WP_001115238.1 type II secretion system protein GspL -
  FNX50_RS01900 (FNX50_01905) gspK 418508..419491 (-) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  FNX50_RS01905 (FNX50_01910) gspJ 419484..420071 (-) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  FNX50_RS01910 (FNX50_01915) gspI 420064..420441 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  FNX50_RS01915 (FNX50_01920) gspH 420438..420947 (-) 510 WP_001076046.1 type II secretion system minor pseudopilin GspH -
  FNX50_RS01920 (FNX50_01925) gspG 420955..421392 (-) 438 WP_032258448.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=454727 FNX50_RS01885 WP_000178161.1 416195..416872(-) (pilD) [Escherichia coli strain AR Bank #0346]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=454727 FNX50_RS01885 WP_000178161.1 416195..416872(-) (pilD) [Escherichia coli strain AR Bank #0346]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378