Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   A7A1_RS18380 Genome accession   NC_019896
Coordinates   3564292..3564726 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. subtilis str. BSP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3559292..3569726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A1_RS18365 (A7A1_1627) epsK 3559922..3560773 (-) 852 WP_015252791.1 cyclic-di-GMP receptor EpsK -
  A7A1_RS18370 (A7A1_1628) ephJ 3560754..3561842 (-) 1089 WP_015252792.1 hypothetical protein -
  A7A1_RS18375 (A7A1_1629) topB 3562044..3564227 (-) 2184 WP_015252793.1 DNA topoisomerase III -
  A7A1_RS18380 (A7A1_1630) lrpC 3564292..3564726 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  A7A1_RS18385 (A7A1_1631) ydzA 3564911..3565201 (+) 291 WP_015252794.1 DUF3817 domain-containing protein -
  A7A1_RS18390 (A7A1_1632) amj 3565245..3566054 (-) 810 WP_015252795.1 lipid II flippase Amj -
  A7A1_RS18395 (A7A1_1633) ydaG 3566561..3566983 (-) 423 WP_015252796.1 pyridoxamine 5'-phosphate oxidase family protein -
  A7A1_RS18400 (A7A1_1634) ydaF 3567061..3567612 (-) 552 WP_015252797.1 GNAT family protein -
  A7A1_RS18405 (A7A1_1635) lyxE 3567700..3568203 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  A7A1_RS18410 (A7A1_1636) ydaD 3568219..3569079 (-) 861 WP_015252798.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=45471 A7A1_RS18380 WP_003246585.1 3564292..3564726(-) (lrpC) [Bacillus subtilis subsp. subtilis str. BSP1]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=45471 A7A1_RS18380 WP_003246585.1 3564292..3564726(-) (lrpC) [Bacillus subtilis subsp. subtilis str. BSP1]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment