Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   JEY30_RS27895 Genome accession   NZ_CP066351
Coordinates   5931717..5934695 (+) Length   992 a.a.
NCBI ID   WP_038955443.1    Uniprot ID   A0ABV2RX28
Organism   Bradyrhizobium japonicum strain S06B-BJ     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5926717..5939695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEY30_RS27870 (JEY30_27655) ssb 5926890..5927390 (-) 501 WP_038933009.1 single-stranded DNA-binding protein Machinery gene
  JEY30_RS27875 (JEY30_27660) - 5927842..5928609 (+) 768 WP_248888265.1 outer membrane beta-barrel protein -
  JEY30_RS27880 (JEY30_27665) - 5928843..5929532 (+) 690 WP_028153430.1 outer membrane protein -
  JEY30_RS27885 (JEY30_27670) - 5929756..5930511 (+) 756 WP_038933013.1 outer membrane beta-barrel protein -
  JEY30_RS27890 (JEY30_27675) - 5930654..5931412 (+) 759 WP_038955444.1 outer membrane beta-barrel protein -
  JEY30_RS27895 (JEY30_27680) uvrA 5931717..5934695 (+) 2979 WP_038955443.1 excinuclease ABC subunit UvrA Machinery gene
  JEY30_RS27900 (JEY30_27685) - 5934916..5935556 (+) 641 Protein_5566 HAD-IA family hydrolase -
  JEY30_RS27905 (JEY30_27690) - 5935592..5936512 (+) 921 WP_248888266.1 nucleoside hydrolase -
  JEY30_RS27910 (JEY30_27695) - 5936527..5937480 (-) 954 WP_014495100.1 cytochrome D1 domain-containing protein -
  JEY30_RS27915 (JEY30_27700) - 5937483..5938052 (-) 570 WP_038955439.1 SRPBCC family protein -
  JEY30_RS27920 (JEY30_27705) - 5938862..5939629 (-) 768 Protein_5570 AAA family ATPase -

Sequence

Protein


Download         Length: 992 a.a.        Molecular weight: 109436.97 Da        Isoelectric Point: 7.4200

>NTDB_id=454696 JEY30_RS27895 WP_038955443.1 5931717..5934695(+) (uvrA) [Bradyrhizobium japonicum strain S06B-BJ]
MDEVIKAKRQQQNAGSSLRAITIRGAREHNLKNVDVEIPRDKLVVFTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ
FLEMMQKPDVDQIDGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARVGVPYSPATGLPIESQTVSQMVDRVLALP
EGTRLYLLAPVVRGRKGEYRKELAEWLKKGFQRVKIDGTFHELAEAPTLDKKFPHDIDVVVDRIVVRADIGQRLAESFET
ALKLAEGLAVVEFADAPAAAAPAEEKKKTAKIHDKSGPERILFSEKFACPVSGFTIPEIEPRLFSFNNPYGACPACGGLG
VEQHVDEDLVIPDKELAIGKGAIAPWAKSSSPYYVQTLTALGKHYKFTLTTKWKDLPKKTQNAILLGSGEDEIKFSYEDG
VRSYDTKKAFEGVITNINRRYRETESEWAREELAKYFHDVPCEGCKGFRLKPEALCVKIGAKHIGEISELSVRKAGEWFE
TVPEALNTQQNEIAGRILKEIRERLTFLLDVGLNYLTLSRSSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQR
DNARLLDTLKRLRDLGNTVIVVEHDEDAILLADYVLDIGPGAGMHGGNIVAEGTPAEIMRNPKSLTGKYLTGELEVEVPE
RRPPNHRRTIKVVNARGNNLKNVTAEIPLGLFTAVTGVSGGGKSTLLIDTLYKSIARKLNGASEGAAPHDRIEGLEHIDK
IIDIDQSPIGRTPRSNPATYTGAFTPIREWFAGLPEAKARGYEPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCD
VCKGKRYNRETLEVLFKGKSIADVLDMTVEEAAEFFKAVPRVRETFQTLHRVGLDYIHVGQQATTLSGGEAQRVKLAKEL
SKRATGRTLYILDEPTTGLHFHDVKKLLEVLHELVAQGNTVVVIEHNLEVIKTADWVIDLGPEGGDGGGEIVAWGPPEDI
AKAPRSYTGKFLEPVLKKARKPKRRSTSEAAE

Nucleotide


Download         Length: 2979 bp        

>NTDB_id=454696 JEY30_RS27895 WP_038955443.1 5931717..5934695(+) (uvrA) [Bradyrhizobium japonicum strain S06B-BJ]
ATGGATGAAGTGATCAAGGCGAAGCGCCAACAGCAGAACGCGGGATCCAGCCTGCGCGCAATTACGATCCGTGGCGCGCG
CGAGCACAACCTCAAGAATGTCGACGTCGAGATTCCCCGCGACAAGCTGGTGGTGTTCACGGGGCTGTCGGGCTCCGGCA
AATCCTCGCTCGCCTTCGACACCATCTATGCCGAGGGCCAGCGCCGCTACGTCGAATCGCTGTCGGCCTATGCGCGCCAG
TTCCTGGAGATGATGCAGAAGCCTGATGTCGACCAGATCGACGGCCTGTCGCCGGCGATCTCGATCGAGCAGAAGACGAC
CTCGAAGAACCCGCGCTCGACCGTCGGCACCGTCACCGAGATCTACGACTACATGCGCCTGCTCTGGGCGCGCGTCGGCG
TGCCCTATTCGCCTGCCACGGGCCTGCCGATCGAGAGCCAGACCGTCTCGCAGATGGTCGACCGCGTGCTGGCGCTGCCC
GAAGGCACCCGCCTCTATCTGCTCGCCCCCGTCGTGCGCGGCCGCAAGGGCGAGTACCGCAAGGAGCTCGCCGAATGGCT
CAAGAAAGGCTTTCAGCGCGTCAAGATCGACGGCACCTTCCATGAGCTCGCGGAGGCGCCGACGCTCGACAAGAAATTTC
CGCACGACATCGACGTCGTGGTCGACCGCATCGTGGTGCGCGCCGACATCGGCCAGCGCCTCGCCGAAAGCTTCGAGACC
GCGCTGAAGCTCGCGGAGGGCCTCGCCGTCGTCGAGTTCGCCGATGCGCCTGCAGCGGCTGCACCAGCCGAAGAAAAGAA
GAAGACCGCAAAAATCCACGACAAGAGCGGGCCCGAGCGCATCCTGTTCTCGGAAAAGTTCGCCTGTCCCGTCTCCGGCT
TCACGATCCCCGAGATCGAGCCGCGCCTGTTCTCGTTCAACAATCCCTACGGCGCCTGCCCGGCCTGCGGCGGCCTCGGC
GTCGAGCAGCATGTCGACGAAGACCTCGTCATCCCCGACAAGGAGCTCGCCATCGGCAAGGGCGCGATCGCGCCCTGGGC
CAAGTCGTCATCGCCCTACTACGTGCAGACGCTGACGGCGCTCGGCAAGCACTACAAGTTCACGCTGACCACCAAATGGA
AGGATCTGCCGAAGAAGACGCAGAACGCGATCCTCCTTGGCTCGGGCGAGGACGAGATCAAGTTCTCCTACGAGGACGGC
GTCCGCTCCTACGACACCAAGAAGGCGTTCGAAGGCGTCATCACCAACATCAACCGCCGCTATCGCGAGACCGAGAGCGA
GTGGGCGCGCGAGGAGCTCGCAAAATATTTCCACGACGTCCCCTGCGAGGGCTGCAAGGGTTTCCGGCTGAAGCCCGAGG
CGCTCTGCGTCAAGATCGGGGCTAAGCATATCGGCGAGATCTCGGAGCTGTCGGTCAGGAAGGCCGGCGAATGGTTCGAG
ACCGTGCCCGAGGCGCTGAACACGCAGCAGAACGAGATCGCCGGCCGCATCCTCAAGGAGATCCGCGAGCGCCTCACCTT
CCTTCTCGACGTCGGCCTCAACTACCTCACCCTGTCCCGCTCCTCCGGCACGCTGTCCGGCGGCGAGAGCCAGCGCATCC
GCCTCGCCTCGCAGATCGGCTCGGGACTGACGGGCGTGCTCTACGTGCTGGACGAGCCCTCGATCGGCCTGCACCAGCGC
GACAACGCCCGCCTGCTCGACACCCTCAAGCGCCTGCGCGATCTCGGCAACACCGTGATCGTGGTCGAGCATGACGAGGA
CGCGATCCTGCTTGCCGATTACGTCCTCGACATCGGCCCCGGCGCCGGCATGCATGGCGGCAACATCGTCGCCGAAGGCA
CGCCCGCCGAGATCATGCGCAACCCTAAATCGCTCACCGGCAAGTACCTGACCGGCGAGCTCGAGGTCGAGGTGCCGGAG
CGGCGCCCGCCGAACCATCGCCGCACCATCAAGGTGGTCAACGCGCGCGGCAATAACCTCAAGAACGTCACGGCGGAAAT
TCCGCTCGGCCTGTTCACGGCCGTCACCGGCGTGTCCGGCGGCGGCAAGTCGACGCTGCTGATCGACACGCTCTACAAGT
CCATCGCACGCAAGCTGAACGGCGCCAGCGAAGGCGCCGCACCCCACGATCGCATCGAGGGCCTCGAGCACATCGACAAG
ATCATCGACATCGACCAGTCGCCGATCGGCCGCACCCCGCGCTCGAACCCCGCGACCTACACCGGCGCCTTCACGCCGAT
CCGCGAATGGTTCGCCGGCCTGCCCGAAGCGAAGGCGCGCGGCTACGAGCCCGGCCGCTTCTCCTTCAACGTCAAAGGCG
GCCGCTGCGAGGCCTGCCAGGGCGACGGCGTCATCAAGATCGAGATGCACTTCCTGCCCGACGTCTATGTCACCTGCGAC
GTCTGCAAGGGCAAGCGCTACAACCGCGAGACGCTGGAGGTCCTGTTCAAGGGCAAGAGCATCGCCGACGTGCTCGACAT
GACCGTCGAGGAAGCCGCCGAGTTCTTCAAGGCGGTGCCGCGCGTGCGCGAGACGTTCCAGACGCTGCACCGCGTCGGCC
TCGACTATATCCATGTTGGCCAGCAGGCGACCACGCTCTCCGGCGGCGAAGCCCAGCGCGTCAAGCTCGCCAAGGAATTG
TCCAAGCGCGCCACCGGCCGCACACTCTACATCCTGGACGAACCGACCACCGGCCTGCACTTCCACGACGTCAAGAAGCT
CTTGGAGGTGCTGCACGAGCTGGTCGCCCAAGGCAACACGGTCGTCGTCATCGAGCACAATCTCGAAGTCATCAAGACCG
CCGACTGGGTCATCGACCTCGGCCCCGAAGGCGGCGACGGCGGCGGCGAAATCGTCGCCTGGGGCCCGCCGGAGGATATC
GCAAAGGCGCCAAGGAGCTATACCGGCAAATTCTTGGAGCCAGTGTTGAAGAAGGCGCGGAAGCCGAAGCGGCGGAGCAC
GAGCGAGGCGGCGGAGTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(147-254)

UvrA DNA-binding domain (UvrA_DNA-bind)

(326-435)

ABC transporter (ABC_tran)

(827-896)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

58.897

96.875

0.571
  uvrA Streptococcus pneumoniae TIGR4

58.897

96.875

0.571
  uvrA Streptococcus pneumoniae D39

58.897

96.875

0.571