Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BSNT_RS05840 Genome accession   NC_017196
Coordinates   1117397..1117975 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. natto BEST195     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1112397..1122975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSNT_RS05820 (BSNT_01761) hemAT 1112917..1114215 (-) 1299 WP_014479367.1 heme-based aerotactic transducer HemAT -
  BSNT_RS05825 yhfW 1114354..1115882 (-) 1529 Protein_1076 FAD-dependent oxidoreductase -
  BSNT_RS05830 (BSNT_01765) yhxC 1115986..1116843 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  BSNT_RS05835 (BSNT_01767) yhzC 1116871..1117104 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  BSNT_RS05840 (BSNT_01768) comK 1117397..1117975 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  BSNT_RS05845 (BSNT_01769) yhxD 1118020..1118919 (-) 900 WP_014479372.1 SDR family oxidoreductase -
  BSNT_RS05850 (BSNT_01772) yhjA 1119136..1119405 (+) 270 WP_014479373.1 excalibur calcium-binding domain-containing protein -
  BSNT_RS05855 (BSNT_01773) yhjB 1119449..1120918 (-) 1470 WP_014479374.1 sodium:solute symporter -
  BSNT_RS05860 (BSNT_01775) yhjC 1120915..1121115 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  BSNT_RS05865 (BSNT_01776) - 1121314..1121685 (-) 372 WP_014476361.1 hypothetical protein -
  BSNT_RS05870 (BSNT_01777) yhjE 1121837..1122460 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  BSNT_RS05875 (BSNT_01778) lepB 1122462..1122968 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=45469 BSNT_RS05840 WP_003245329.1 1117397..1117975(+) (comK) [Bacillus subtilis subsp. natto BEST195]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=45469 BSNT_RS05840 WP_003245329.1 1117397..1117975(+) (comK) [Bacillus subtilis subsp. natto BEST195]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment