Detailed information    

insolico Bioinformatically predicted

Overview

Name   cipB   Type   Regulator
Locus tag   IGS65_RS05750 Genome accession   NZ_CP066294
Coordinates   1181749..1181979 (-) Length   76 a.a.
NCBI ID   WP_002275977.1    Uniprot ID   Q8DVP7
Organism   Streptococcus mutans strain 27-3     
Function   indirect induction of ComX; activation of comRS system (predicted from homology)   
Competence regulation

Genomic Context

Location: 1176749..1186979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS05725 (IGS65_005725) - 1176778..1177299 (+) 522 WP_002307690.1 YgjV family protein -
  IGS65_RS05730 (IGS65_005730) - 1177406..1178227 (-) 822 WP_032506336.1 Cof-type HAD-IIB family hydrolase -
  IGS65_RS05735 (IGS65_005735) copZ 1178473..1178676 (-) 204 WP_002263706.1 copper chaperone CopZ -
  IGS65_RS05740 (IGS65_005740) - 1178689..1180917 (-) 2229 WP_002267781.1 heavy metal translocating P-type ATPase -
  IGS65_RS05745 (IGS65_005745) - 1180914..1181357 (-) 444 WP_002264871.1 CopY/TcrY family copper transport repressor -
  IGS65_RS05750 (IGS65_005750) cipB 1181749..1181979 (-) 231 WP_002275977.1 bacteriocin class II family protein Regulator
  IGS65_RS05755 (IGS65_005755) rbfA 1182437..1182787 (-) 351 WP_002262599.1 30S ribosome-binding factor RbfA -
  IGS65_RS05760 (IGS65_005760) infB 1183021..1185771 (-) 2751 WP_192072078.1 translation initiation factor IF-2 -
  IGS65_RS05765 (IGS65_005765) - 1185792..1186094 (-) 303 WP_002262601.1 YlxQ-related RNA-binding protein -
  IGS65_RS05770 (IGS65_005770) - 1186087..1186383 (-) 297 WP_002263922.1 YlxR family protein -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 7229.19 Da        Isoelectric Point: 3.7781

>NTDB_id=454597 IGS65_RS05750 WP_002275977.1 1181749..1181979(-) (cipB) [Streptococcus mutans strain 27-3]
MNTQAFEQFNVMDNEALSTVEGGGMIRCALGTAGSAGLGFVGGMGAGTVTLPVVGTVSGAALGGWSGAAVGAATFC

Nucleotide


Download         Length: 231 bp        

>NTDB_id=454597 IGS65_RS05750 WP_002275977.1 1181749..1181979(-) (cipB) [Streptococcus mutans strain 27-3]
ATGAATACACAAGCATTTGAACAATTTAACGTAATGGATAATGAAGCACTTTCAACTGTTGAGGGTGGTGGTATGATTAG
ATGTGCACTTGGCACAGCTGGTTCTGCAGGTTTAGGATTTGTAGGGGGTATGGGAGCTGGTACAGTTACTCTCCCAGTCG
TTGGTACAGTATCTGGAGCGGCTTTAGGAGGCTGGTCTGGAGCAGCTGTAGGTGCTGCTACTTTTTGTTGA

Domains

Predicted by InterProScan.

Bacteriocin class II with double-glycine leader peptide (Bacteriocin_IIc)

(6-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cipB Streptococcus mutans UA159

71.429

55.263

0.395