Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   IGS65_RS05540 Genome accession   NZ_CP066294
Coordinates   1136390..1136872 (+) Length   160 a.a.
NCBI ID   WP_192072086.1    Uniprot ID   -
Organism   Streptococcus mutans strain 27-3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1131390..1141872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS05525 (IGS65_005525) rpoZ 1133218..1133535 (-) 318 WP_002266355.1 DNA-directed RNA polymerase subunit omega -
  IGS65_RS05530 (IGS65_005530) gmk 1133559..1134191 (-) 633 WP_002263045.1 guanylate kinase -
  IGS65_RS05535 (IGS65_005535) - 1134638..1136245 (-) 1608 WP_002263046.1 ribonuclease Y -
  IGS65_RS05540 (IGS65_005540) luxS 1136390..1136872 (+) 483 WP_192072086.1 S-ribosylhomocysteine lyase Regulator
  IGS65_RS05545 (IGS65_005545) - 1137033..1138673 (-) 1641 WP_019319065.1 cell division site-positioning protein MapZ family protein -
  IGS65_RS05550 (IGS65_005550) - 1138689..1139843 (-) 1155 WP_192072085.1 class I SAM-dependent RNA methyltransferase -
  IGS65_RS05560 (IGS65_005560) gpsB 1140293..1140631 (-) 339 WP_002263050.1 cell division regulator GpsB -
  IGS65_RS05565 (IGS65_005565) - 1140737..1141258 (-) 522 WP_002263051.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17988.61 Da        Isoelectric Point: 6.1364

>NTDB_id=454595 IGS65_RS05540 WP_192072086.1 1136390..1136872(+) (luxS) [Streptococcus mutans strain 27-3]
MTKEVTVESFELDHTAVKAPYVRLISEEFGPKGDLITNFDIRLVQPNEDSIPTAGLHTIEHLLAKLIRQRIDGLIDCSPF
GCRTGFHLIMWGKHTTTQIATVIKASLEEITNTISWKDVPGTTIESCGNYKDHSLFSAKEWAKLILKQGISDDPFERHLV

Nucleotide


Download         Length: 483 bp        

>NTDB_id=454595 IGS65_RS05540 WP_192072086.1 1136390..1136872(+) (luxS) [Streptococcus mutans strain 27-3]
ATGACAAAAGAAGTTACTGTTGAAAGCTTTGAACTTGACCACACTGCTGTAAAAGCCCCTTATGTCCGTCTTATTTCAGA
AGAGTTTGGACCTAAAGGCGATCTTATTACCAATTTTGATATTCGCTTAGTACAGCCTAATGAAGACTCTATTCCGACTG
CAGGCCTTCATACTATTGAACATTTACTGGCTAAGCTGATTCGTCAGCGTATTGACGGGTTGATTGACTGTTCCCCTTTT
GGCTGTCGTACTGGTTTTCATCTCATCATGTGGGGTAAGCATACAACAACCCAAATAGCCACAGTCATCAAAGCAAGTTT
AGAAGAAATTACTAATACAATCTCATGGAAAGATGTCCCTGGAACAACTATTGAGTCCTGTGGGAATTACAAAGATCATA
GCCTTTTTTCAGCTAAAGAATGGGCAAAACTGATTTTAAAACAAGGCATTTCAGATGATCCTTTTGAGCGTCATCTAGTG
TAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

39.597

93.125

0.369