Detailed information    

insolico Bioinformatically predicted

Overview


Name   xerS   Type   Machinery gene
Locus tag   IGS65_RS03070 Genome accession   NZ_CP066294
Coordinates   607780..608850 (+) Length   356 a.a.
NCBI ID   WP_002265016.1    Uniprot ID   -
Organism   Streptococcus mutans strain 27-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 602780..613850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS03045 (IGS65_003045) - 603425..604258 (+) 834 WP_002265021.1 glycosyltransferase family 8 protein -
  IGS65_RS03050 (IGS65_003050) - 604267..604959 (+) 693 WP_002266735.1 response regulator transcription factor -
  IGS65_RS03055 (IGS65_003055) - 604959..605837 (+) 879 WP_192072219.1 HAMP domain-containing sensor histidine kinase -
  IGS65_RS03060 (IGS65_003060) - 605887..606630 (-) 744 WP_002266015.1 ABC transporter permease -
  IGS65_RS03065 (IGS65_003065) - 606651..607559 (-) 909 WP_192072218.1 ABC transporter ATP-binding protein -
  IGS65_RS03070 (IGS65_003070) xerS 607780..608850 (+) 1071 WP_002265016.1 tyrosine recombinase XerS Machinery gene
  IGS65_RS03075 (IGS65_003075) - 609251..610468 (-) 1218 WP_192072217.1 tyrosine-type recombinase/integrase -
  IGS65_RS03080 (IGS65_003080) - 610549..610752 (-) 204 WP_002262306.1 excisionase -
  IGS65_RS03085 (IGS65_003085) - 611207..611437 (-) 231 WP_002271367.1 helix-turn-helix domain-containing protein -
  IGS65_RS03090 (IGS65_003090) - 611434..611856 (-) 423 WP_192072216.1 sigma-70 family RNA polymerase sigma factor -
  IGS65_RS03095 (IGS65_003095) - 612187..612375 (-) 189 WP_080007638.1 cysteine-rich KTR domain-containing protein -
  IGS65_RS03100 (IGS65_003100) - 612381..613415 (-) 1035 WP_002262309.1 alpha/beta hydrolase -

Sequence


Protein


Download         Length: 356 a.a.        Molecular weight: 41592.88 Da        Isoelectric Point: 9.6657

>NTDB_id=454563 IGS65_RS03070 WP_002265016.1 607780..608850(+) (xerS) [Streptococcus mutans strain 27-3]
MRRELLLEKIDELKELMPWYVLEYYQSKLTVPYSFTTLYEYLKEYRRFFEWLINSGVSDANKLADIPLETLEHLSKKDME
SFILYLRERTLLNTKNKRQGVSQTTINRTLSALSSLYKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGNETMEFLEYVDCEYEHKLSKRALSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVTRKGGKHDS
VNVAGFAKPYLENYITIRRGRYKAEKTDLAFFLSEYRGVPNRMDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=454563 IGS65_RS03070 WP_002265016.1 607780..608850(+) (xerS) [Streptococcus mutans strain 27-3]
ATGAGACGTGAACTCTTACTTGAAAAAATTGACGAACTTAAGGAACTTATGCCTTGGTATGTGCTAGAGTATTATCAATC
TAAATTGACAGTTCCTTATAGTTTTACGACCTTATACGAATATTTAAAAGAATATCGGCGTTTCTTTGAATGGTTAATCA
ATTCTGGCGTTTCTGATGCGAATAAACTTGCCGATATTCCGCTGGAAACTTTGGAGCATCTTAGTAAAAAAGATATGGAA
TCCTTTATTCTTTATTTACGAGAACGAACTCTTTTAAACACTAAAAACAAACGTCAAGGTGTTTCTCAGACAACGATAAA
CCGCACACTTTCAGCCTTATCAAGCCTTTATAAATACTTGACTGAGGAAGTTGAAAATGCTGATGGTGAACCTTATTTTT
ATCGAAATGTCATGAAAAAGGTATCAACTAAAAAGAAAAAGGAAACATTGGCCGCACGAGCTGAGAATATTAAACAAAAG
CTCTTTTTAGGCAATGAAACAATGGAATTTTTAGAATATGTGGATTGTGAATATGAACACAAACTTTCTAAACGCGCTCT
TTCCTCTTTTCGAAAAAATAAAGAAAGAGATTTGGCAATTATTGCTTTGCTGCTAGCATCTGGAGTTCGTCTTTCAGAGG
CTGTTAACCTTGATCTTAAGGATGTTAATCTCAATATGATGATTATTGAAGTTACCCGTAAGGGCGGCAAACACGATTCG
GTTAATGTCGCTGGTTTCGCTAAACCTTATTTAGAAAACTACATTACTATCAGACGGGGGCGCTACAAGGCTGAAAAGAC
TGATCTAGCTTTCTTTTTATCCGAATATCGTGGTGTTCCTAATCGCATGGATGCTTCTTCTATTGAAAAAATGGTTGCTA
AATATTCGCAAGATTTCAAAATCCGCGTCACTCCCCACAAACTAAGACACACGCTTGCAACTAGATTATACGATGCTACC
AAATCACAAGTTTTGGTCAGTCATCAATTAGGTCATGCTTCTACTCAAGTAACAGACCTTTATACTCATATCGTTAATGA
TGAACAAAAAAATGCTTTAGATAAATTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.865

100

0.829