Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   I6I05_RS11540 Genome accession   NZ_CP066274
Coordinates   1605424..1608345 (+) Length   973 a.a.
NCBI ID   WP_003515263.1    Uniprot ID   A0A1B9UEG4
Organism   Agrobacterium tumefaciens strain FDAARGOS_1048     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1600424..1613345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I05_RS11525 (I6I05_11525) - 1602615..1603244 (+) 630 WP_003515260.1 MarC family protein -
  I6I05_RS11530 (I6I05_11530) - 1603368..1604516 (+) 1149 WP_038491010.1 HPP family protein -
  I6I05_RS11535 (I6I05_11535) ssb 1604583..1605158 (-) 576 WP_003515262.1 single-stranded DNA-binding protein Machinery gene
  I6I05_RS11540 (I6I05_11540) uvrA 1605424..1608345 (+) 2922 WP_003515263.1 excinuclease ABC subunit UvrA Machinery gene
  I6I05_RS11545 (I6I05_11545) - 1608402..1609202 (+) 801 WP_038491013.1 DUF72 domain-containing protein -
  I6I05_RS11550 (I6I05_11550) dusA 1609208..1610218 (-) 1011 WP_038491016.1 tRNA dihydrouridine(20/20a) synthase DusA -
  I6I05_RS11555 (I6I05_11555) - 1610358..1611047 (+) 690 WP_003515271.1 fumarylacetoacetate hydrolase family protein -
  I6I05_RS11560 (I6I05_11560) - 1611085..1611618 (+) 534 WP_038491019.1 gamma carbonic anhydrase family protein -
  I6I05_RS11565 (I6I05_11565) zur 1611658..1612062 (-) 405 WP_025593459.1 zinc uptake transcriptional repressor Zur -
  I6I05_RS11570 (I6I05_11570) znuB 1612059..1612877 (-) 819 WP_038491022.1 zinc ABC transporter permease subunit ZnuB -

Sequence

Protein


Download         Length: 973 a.a.        Molecular weight: 107177.22 Da        Isoelectric Point: 6.7160

>NTDB_id=454526 I6I05_RS11540 WP_003515263.1 1605424..1608345(+) (uvrA) [Agrobacterium tumefaciens strain FDAARGOS_1048]
MSELKTISIRGAREHNLKGIDLDLPRNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLEMMQKPDVDRIE
GLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLFARVGVPYSPATGLPIESQTVSQMVDRILAFEEGTRLYILAPIVRG
RKGEYKKELAELMKKGFQRVKVDGQFYEIADVPVLDKKYKHDIDVVVDRAVVRPDMAARLADSLETCLKLADGLAVAEFA
DKPLPPEETSAGGSANKSLNETHERMLFSEKFACPVSGFTIPEIEPRLFSFNNPFGACPTCDGLGSQQKVDENLIVPEPA
RTLRDGAIAPWAKSSSPYYNQTLEALGKAFGFKLSSKWTDLSKEAQHAILQGTDDKIEFNYQDGARSYKTVKNFEGIVPN
LERRWKETDSAWAREEIERYMSAAPCPACAGYRLKPEALAVKINRMHIGEVTQMSIRMARDWFETLPENLNAKQNEIAVR
ILKEIRERLRFLNDVGLDYLSLSRNSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNARLLDTLKHLRDIG
NTVIVVEHDEDAILTADYVVDIGPAAGIHGGQVIAEGTPQEVMANPKSLTGKYLSGELGVAVPAERRKPKKGREIKVFGA
RGNNLKNVTAAVPLGVFTAVTGVSGGGKSTFLIETLYKSAARRVMGAREIPAEHDRIDGFEFIDKVIDIDQSPIGRTPRS
NPATYTGAFTPIRDWFAGLPEAKARGYAPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCHGKRYNRETLDVT
FKGKSIADVLDMTVEEGVEFFAAVPAVRDKLQALFDVGLGYIKVGQQANTLSGGEAQRVKLAKELSKRSTGRTLYILDEP
TTGLHFHDVNKLLEMLQALVDQGNSVVVIEHNLEVIKTADWIIDIGPEGGTGGGEVVATGTPEDIVKNERSYTGHFLKEL
LERRPAGKREAAE

Nucleotide


Download         Length: 2922 bp        

>NTDB_id=454526 I6I05_RS11540 WP_003515263.1 1605424..1608345(+) (uvrA) [Agrobacterium tumefaciens strain FDAARGOS_1048]
ATGAGTGAACTGAAGACGATTTCCATCCGTGGTGCCCGTGAGCATAACCTCAAGGGTATCGATCTGGATCTACCGCGCAA
CAAGCTGATCGTCATGACCGGGCTCTCCGGCTCGGGCAAGTCGTCGCTCGCCTTCGACACAATCTATGCCGAGGGCCAGC
GCCGTTATGTCGAGAGCCTCTCGGCCTATGCGCGCCAGTTCCTCGAAATGATGCAGAAGCCGGATGTAGACCGCATCGAG
GGGCTTTCTCCGGCGATTTCCATCGAGCAGAAAACCACCTCGAAGAACCCGCGCTCTACGGTCGGCACGGTCACGGAAAT
CTACGACTATATGCGCCTGCTGTTTGCGCGTGTCGGTGTGCCCTACTCGCCGGCGACGGGCCTGCCGATCGAGAGCCAGA
CGGTCAGCCAGATGGTCGACCGTATCCTTGCCTTCGAGGAAGGCACGCGCCTTTATATTCTCGCGCCGATCGTGCGCGGC
CGCAAAGGCGAATATAAAAAGGAACTCGCCGAACTGATGAAGAAGGGCTTCCAGCGCGTCAAGGTGGATGGCCAGTTCTA
CGAGATCGCTGACGTTCCCGTCCTCGACAAGAAGTACAAACACGATATCGATGTGGTGGTGGACCGCGCCGTCGTGCGCC
CGGACATGGCAGCACGCCTTGCCGACAGTCTCGAGACCTGCCTCAAGCTCGCCGACGGGTTGGCAGTGGCCGAATTTGCC
GACAAGCCCCTGCCGCCGGAAGAAACCTCGGCTGGCGGCTCCGCAAACAAATCGCTCAATGAGACCCACGAGCGTATGCT
GTTTTCGGAAAAATTCGCCTGCCCGGTCTCCGGCTTCACCATCCCGGAAATCGAGCCCCGGCTTTTCTCCTTCAACAATC
CCTTCGGCGCCTGCCCCACCTGTGACGGTCTCGGCTCGCAGCAGAAGGTGGACGAAAACCTGATCGTGCCAGAACCTGCA
CGCACCCTGCGGGATGGCGCGATCGCCCCCTGGGCCAAGTCGTCTTCCCCCTATTACAACCAGACGCTGGAGGCGCTGGG
CAAGGCCTTCGGTTTCAAGCTGTCGAGCAAATGGACGGACCTTTCGAAAGAGGCGCAGCACGCCATTCTCCAGGGCACTG
ACGACAAGATCGAGTTCAACTATCAGGACGGTGCGCGCTCCTACAAGACGGTGAAGAATTTCGAAGGCATCGTTCCCAAT
CTGGAGCGTCGCTGGAAAGAAACCGACAGCGCCTGGGCGCGCGAGGAAATCGAGCGTTATATGTCGGCGGCCCCCTGCCC
GGCCTGCGCCGGCTATCGCCTGAAGCCGGAAGCGCTCGCCGTCAAGATCAACAGAATGCACATCGGCGAAGTCACCCAGA
TGTCGATCCGTATGGCACGCGACTGGTTCGAGACGCTGCCGGAAAATCTGAACGCCAAACAGAACGAGATCGCGGTTCGC
ATCCTCAAGGAAATCCGCGAACGTCTGCGATTCCTCAACGATGTCGGGCTGGATTATCTCAGCCTGTCACGCAACTCCGG
CACGCTTTCCGGCGGAGAAAGCCAGCGCATCCGGCTTGCTTCGCAAATCGGCTCCGGCCTCACGGGCGTTCTCTATGTTC
TGGACGAGCCCTCCATCGGCCTGCACCAGCGCGACAATGCCCGTCTGCTCGATACGCTGAAACATCTGCGTGATATCGGC
AATACGGTGATCGTGGTCGAACACGACGAGGATGCCATTCTGACGGCGGATTACGTTGTCGATATCGGCCCTGCCGCCGG
CATTCACGGCGGTCAGGTCATCGCCGAAGGCACGCCGCAGGAGGTTATGGCCAATCCGAAATCGCTGACCGGAAAATATC
TATCCGGCGAACTCGGCGTCGCCGTGCCGGCAGAACGCCGCAAGCCGAAGAAGGGCCGCGAAATCAAGGTTTTTGGCGCA
CGCGGCAACAACCTGAAGAATGTGACTGCGGCCGTTCCCCTTGGCGTTTTCACCGCCGTTACCGGCGTGTCGGGTGGTGG
CAAATCCACCTTCCTGATCGAGACGCTCTATAAGTCGGCAGCACGCCGGGTGATGGGCGCGCGCGAAATTCCGGCCGAGC
ATGACCGCATCGATGGTTTCGAATTCATCGACAAGGTGATCGATATCGACCAGTCGCCAATCGGCCGCACGCCACGATCA
AACCCCGCCACCTACACCGGCGCATTCACGCCGATCCGTGACTGGTTCGCCGGTCTGCCGGAGGCGAAGGCGCGCGGTTA
TGCACCTGGCCGTTTCTCCTTCAACGTCAAGGGTGGCCGCTGCGAAGCCTGCCAGGGCGACGGCGTCATCAAGATCGAGA
TGCACTTCCTGCCTGATGTCTATGTCACCTGCGACGTCTGCCACGGCAAGCGTTACAATCGCGAGACGCTGGATGTGACC
TTCAAGGGCAAGTCCATTGCCGACGTGCTTGATATGACGGTGGAAGAAGGCGTTGAATTCTTCGCCGCCGTTCCGGCCGT
GCGTGACAAGCTGCAAGCGCTGTTCGATGTCGGCCTTGGTTACATCAAGGTCGGCCAGCAGGCCAATACGCTCTCCGGCG
GCGAGGCGCAGCGCGTCAAGCTCGCCAAGGAACTGTCGAAACGCTCCACCGGCCGCACGCTCTACATCCTCGATGAGCCG
ACGACGGGTCTCCATTTCCACGACGTCAACAAGCTTCTGGAAATGCTGCAGGCGCTGGTGGATCAGGGCAATTCCGTCGT
GGTAATCGAGCACAATCTCGAAGTCATCAAGACGGCCGACTGGATCATCGATATTGGCCCAGAAGGCGGCACGGGCGGCG
GCGAAGTGGTGGCAACCGGAACGCCAGAAGACATCGTCAAGAACGAGCGCTCCTATACCGGCCATTTCCTGAAGGAACTT
CTGGAACGGCGGCCAGCCGGAAAACGCGAGGCTGCGGAGTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(133-239)

UvrA DNA-binding domain (UvrA_DNA-bind)

(311-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B9UEG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.576

98.356

0.566
  uvrA Streptococcus pneumoniae TIGR4

57.576

98.356

0.566
  uvrA Streptococcus pneumoniae D39

57.576

98.356

0.566