Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   I6I05_RS09220 Genome accession   NZ_CP066274
Coordinates   1132587..1133987 (-) Length   466 a.a.
NCBI ID   WP_038490516.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain FDAARGOS_1048     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1127587..1138987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I05_RS09200 (I6I05_09200) cysS 1127771..1129156 (-) 1386 WP_013635827.1 cysteine--tRNA ligase -
  I6I05_RS09205 (I6I05_09205) - 1129381..1130121 (-) 741 WP_019565381.1 SDR family NAD(P)-dependent oxidoreductase -
  I6I05_RS09210 (I6I05_09210) purF 1130272..1131765 (-) 1494 WP_003512343.1 amidophosphoribosyltransferase -
  I6I05_RS09215 (I6I05_09215) - 1131904..1132491 (-) 588 WP_019565382.1 CvpA family protein -
  I6I05_RS09220 (I6I05_09220) radA/sms 1132587..1133987 (-) 1401 WP_038490516.1 DNA repair protein RadA Machinery gene
  I6I05_RS09225 (I6I05_09225) - 1133993..1134307 (-) 315 WP_051489691.1 type II toxin-antitoxin system RelE/ParE family toxin -
  I6I05_RS09230 (I6I05_09230) - 1134304..1134558 (-) 255 WP_025592949.1 type II toxin-antitoxin system ParD family antitoxin -
  I6I05_RS09235 (I6I05_09235) alr 1134624..1135799 (-) 1176 WP_038490519.1 alanine racemase -
  I6I05_RS09240 (I6I05_09240) - 1135886..1136743 (+) 858 WP_038490521.1 AraC family transcriptional regulator -
  I6I05_RS09245 (I6I05_09245) - 1136836..1137540 (+) 705 WP_038490524.1 AzlC family ABC transporter permease -
  I6I05_RS09250 (I6I05_09250) - 1137537..1137839 (+) 303 WP_038490527.1 AzlD family protein -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 49199.10 Da        Isoelectric Point: 6.5899

>NTDB_id=454516 I6I05_RS09220 WP_038490516.1 1132587..1133987(-) (radA/sms) [Agrobacterium tumefaciens strain FDAARGOS_1048]
MAKAKTQFVCQNCGTVHTRWAGKCEGCGEWNTIVEEDPMGGIGSGPGKTPKKGRAVALTALSGEIEEAPRIPTGISELDR
ATGGGFVRGSAVLIGGDPGIGKSTLLMQAAAALSRRGHRVIYVSGEEAVAQVRLRAQRLGAAETDVLLAAETNVEDILAT
ISESKRPDLVIIDSIQTLWSDTADSAPGTVTQVRTGVQAMIRYAKQTGATMVLVGHVTKEGQIAGPRVVEHMVDAVLYFE
GDRGHHYRILRTVKNRFGPTDEIGVFEMSDRGLREVSNPSELFLGDRNEKSPGAAVFAGMEGTRPILVEVQALVAATSLG
TPRRAVVGWDSSRLAMILAVLEAHCGVKLGQHDVYLNVAGGYRISEPAADMAIASALVSSLAGLALPADCVYFGEISLSG
AVRPVSHTGQRLKEAEKLGFSAALLPSASAELPKAGKGRWTEIESLPDLVARIAGSGNRFKQVEDD

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=454516 I6I05_RS09220 WP_038490516.1 1132587..1133987(-) (radA/sms) [Agrobacterium tumefaciens strain FDAARGOS_1048]
ATGGCCAAAGCCAAGACCCAATTCGTGTGCCAGAACTGCGGCACGGTTCATACCCGCTGGGCGGGAAAATGCGAAGGCTG
CGGCGAGTGGAATACCATCGTCGAAGAAGATCCGATGGGCGGCATCGGCTCCGGCCCCGGCAAGACGCCGAAAAAGGGCC
GGGCGGTCGCGCTCACGGCGCTTTCGGGCGAGATCGAGGAGGCGCCGCGCATTCCGACCGGCATCAGCGAACTGGACCGG
GCAACTGGTGGTGGTTTCGTGCGCGGTTCGGCGGTGTTGATCGGCGGCGATCCCGGCATCGGCAAATCGACCCTGCTGAT
GCAGGCGGCAGCTGCCCTTTCACGGCGCGGACATCGCGTCATCTATGTTTCTGGCGAAGAAGCGGTAGCGCAGGTGCGTC
TGCGGGCCCAGCGGCTGGGTGCGGCGGAAACCGACGTGCTGCTGGCGGCAGAAACCAATGTCGAGGATATTCTGGCGACG
ATTTCCGAGAGCAAACGCCCCGATCTCGTCATCATCGATTCCATCCAGACGCTATGGAGCGACACGGCCGATTCCGCTCC
CGGCACGGTAACGCAGGTGCGCACCGGCGTGCAGGCAATGATCCGTTACGCCAAGCAAACGGGCGCGACCATGGTGCTGG
TGGGCCATGTGACCAAGGAAGGCCAGATCGCCGGTCCGCGCGTGGTGGAGCACATGGTCGACGCCGTGCTTTATTTCGAA
GGCGACCGCGGCCACCATTACCGCATTCTGCGCACCGTCAAGAACCGCTTCGGGCCGACGGACGAGATCGGCGTGTTTGA
AATGTCCGATCGCGGATTGCGCGAGGTCTCCAACCCGTCCGAACTGTTCCTTGGCGACCGCAACGAGAAATCTCCCGGTG
CCGCGGTCTTTGCCGGCATGGAGGGCACCCGTCCCATTCTGGTCGAGGTGCAGGCGCTGGTCGCGGCCACCTCGCTCGGC
ACGCCGCGCCGCGCCGTGGTCGGCTGGGACAGTTCGCGGCTCGCCATGATCCTTGCCGTGCTGGAAGCCCATTGCGGCGT
GAAGCTCGGTCAGCACGACGTTTATCTGAACGTCGCCGGCGGATACCGCATTTCCGAACCGGCTGCGGATATGGCGATAG
CCTCTGCGCTGGTTTCCTCGCTTGCCGGTCTTGCCCTGCCCGCCGATTGCGTCTATTTCGGCGAGATCAGCCTGTCGGGC
GCGGTACGGCCCGTCTCGCATACGGGCCAGCGTTTGAAAGAAGCTGAAAAACTCGGTTTCTCCGCCGCACTTCTGCCGTC
TGCTTCGGCTGAATTGCCGAAAGCGGGCAAGGGGCGCTGGACGGAAATAGAAAGCCTGCCGGACCTCGTGGCGCGCATCG
CCGGTTCCGGCAACCGGTTCAAACAGGTTGAGGACGACTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(83-221)

Subunit ChlI of Mg-chelatase (ChlI)

(343-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

49.548

94.85

0.47
  radA Streptococcus pneumoniae Rx1

46.38

94.85

0.44
  radA Streptococcus pneumoniae D39

46.38

94.85

0.44
  radA Streptococcus pneumoniae R6

46.38

94.85

0.44
  radA Streptococcus pneumoniae TIGR4

46.38

94.85

0.44
  radA Streptococcus mitis SK321

46.544

93.133

0.433
  radA Streptococcus mitis NCTC 12261

46.313

93.133

0.431