Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   H9K57_RS15395 Genome accession   NZ_CP066246
Coordinates   3208719..3209948 (-) Length   409 a.a.
NCBI ID   WP_237301899.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain DHO76     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3203719..3214948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K57_RS15365 (H9K57_15260) - 3203905..3204315 (+) 411 WP_005460376.1 flagellar basal body-associated protein FliL -
  H9K57_RS15370 (H9K57_15265) glpG 3204375..3205217 (-) 843 WP_005460378.1 rhomboid family intramembrane serine protease GlpG -
  H9K57_RS15375 (H9K57_15270) glpE 3205217..3205537 (-) 321 WP_005460380.1 thiosulfate sulfurtransferase GlpE -
  H9K57_RS15380 (H9K57_15275) rpoH 3206028..3206888 (-) 861 WP_005490420.1 RNA polymerase sigma factor RpoH -
  H9K57_RS15385 (H9K57_15280) ftsX 3207064..3208032 (-) 969 WP_005481956.1 permease-like cell division protein FtsX -
  H9K57_RS15390 (H9K57_15285) ftsE 3208022..3208696 (-) 675 WP_005481953.1 cell division ATP-binding protein FtsE -
  H9K57_RS15395 (H9K57_15290) pilA 3208719..3209948 (-) 1230 WP_237301899.1 signal recognition particle-docking protein FtsY Machinery gene
  H9K57_RS15400 (H9K57_15295) rsmD 3210172..3210771 (+) 600 WP_005455148.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  H9K57_RS15405 (H9K57_15300) - 3210797..3211063 (+) 267 WP_005496405.1 DUF1145 domain-containing protein -
  H9K57_RS15410 (H9K57_15305) - 3211117..3211701 (-) 585 WP_005455144.1 YhgN family NAAT transporter -
  H9K57_RS15415 (H9K57_15310) - 3211821..3212042 (-) 222 WP_015297472.1 YecH family metal-binding protein -
  H9K57_RS15420 (H9K57_15315) - 3212112..3212732 (-) 621 WP_005481960.1 lysoplasmalogenase -
  H9K57_RS15425 (H9K57_15320) - 3213709..3214077 (-) 369 WP_005489749.1 hypothetical protein -
  H9K57_RS15430 (H9K57_15325) - 3214319..3214648 (+) 330 WP_015297474.1 DUF2500 domain-containing protein -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44541.11 Da        Isoelectric Point: 4.2583

>NTDB_id=454500 H9K57_RS15395 WP_237301899.1 3208719..3209948(-) (pilA) [Vibrio parahaemolyticus strain DHO76]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVTEEAVEAPSEEQQTEEVAEQAQQSQELEQEPEKAEAAPAEAEAEAEAEAE
AEAEAEEPQVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTKII
NNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVMLAA
GDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKID
DSAPHEIMLTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFETQEF
IDALFSREE

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=454500 H9K57_RS15395 WP_237301899.1 3208719..3209948(-) (pilA) [Vibrio parahaemolyticus strain DHO76]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGCCCAAAACCAAAAACTGA
AGAAACAGTAACAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAACAGCAAACCGAAGAGGTTGCTGAGCAAGCGCAACAAA
GTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAA
GCAGAAGCAGAAGCAGAAGAGCCACAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAGCTTCTT
CGCTCGCCTTAAGCGCAGCCTAAGCCGTACGAAAGCAAACATCGGTGCTGGTTTCTTTGGTCTGTTCAGCGGTAAAAAAA
TCGATGACGACCTATTTGAAGAGCTAGAAGAGCAACTGCTCATTGCCGATGTGGGCATGGACACCACCACAAAAATCATC
AACAACCTGACAGAAAAAGCCTCTCGAGGTGATCTGAAAGATGGCGAAGCCCTTTATGGTCTGCTGAAAGAAGAAATGGC
GGAGATTCTATCTAAAGTAGAACAGCCTCTAGAGATCGACAGCAGCAAAACACCTTATGTCATCTTGATGGTTGGTGTGA
ATGGTGTGGGTAAAACCACCACCATCGGTAAACTTGCGAAGCAGTTCCAAAGCCAAGGCAAGAAAGTGATGTTAGCGGCT
GGCGATACTTTCCGAGCGGCTGCAGTTGAGCAGCTACAAGTGTGGGGCGAGCGTAACAATGTTCCTGTGATCGCGCAGCA
TACTGGCGCAGACAGCGCATCGGTTATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTATTGCCG
ATACGGCGGGTCGTCTACAAAACAAAGCCAATCTAATGGAAGAGCTACGCAAGATTGTGCGTGTGATGAAGAAAATTGAT
GATTCTGCACCACATGAAATCATGCTGACGCTGGATGCAGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACTTTTCAG
TGATGTAGCTCCTCTAACCGGGATTACATTGACTAAGCTGGATGGTACAGCGAAAGGCGGCGTTATTTTCGCTATCGCTG
ATCAGTTTAGTATTCCAATTCGCTACATTGGTGTTGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAAGAGTTT
ATCGACGCTTTGTTTAGCCGTGAAGAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(125-186)

SRP54-type protein, GTPase domain (SRP54)

(206-405)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

49.072

92.176

0.452