Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   I2453_RS06570 Genome accession   NZ_CP066242
Coordinates   1253989..1254855 (-) Length   288 a.a.
NCBI ID   WP_002856218.1    Uniprot ID   -
Organism   Campylobacter jejuni strain RM1221     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1248989..1259855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2453_RS06550 metF 1250842..1251690 (+) 849 WP_011049900.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  I2453_RS06555 - 1251712..1251903 (-) 192 WP_002852856.1 membrane protein -
  I2453_RS06560 atpB 1251900..1252580 (-) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  I2453_RS06565 radA/sms 1252649..1253989 (-) 1341 WP_002856363.1 DNA repair protein RadA Machinery gene
  I2453_RS06570 pilA 1253989..1254855 (-) 867 WP_002856218.1 signal recognition particle-docking protein FtsY Machinery gene
  I2453_RS06575 - 1254855..1255412 (-) 558 WP_002867374.1 TlpA disulfide reductase family protein -
  I2453_RS06580 - 1255495..1256121 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  I2453_RS06585 rny 1256042..1257595 (+) 1554 WP_002867373.1 ribonuclease Y -
  I2453_RS06590 - 1257604..1258161 (+) 558 WP_002856055.1 DedA family protein -
  I2453_RS06595 - 1258161..1259420 (+) 1260 WP_002867371.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32049.03 Da        Isoelectric Point: 5.5179

>NTDB_id=454401 I2453_RS06570 WP_002856218.1 1253989..1254855(-) (pilA) [Campylobacter jejuni strain RM1221]
MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNANAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=454401 I2453_RS06570 WP_002856218.1 1253989..1254855(-) (pilA) [Campylobacter jejuni strain RM1221]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGAGTTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
CAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAGCAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCTCATGAGCT
TGAAAAAATTGTAAGAATTTCAAACAAAGCTTTAGAAGGCGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAATGCTTACTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.584

100

0.437