Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   IOO20_RS03640 Genome accession   NZ_CP066241
Coordinates   674418..674801 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain RM1221     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 669418..679801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOO20_RS03620 - 669497..671431 (-) 1935 WP_002867720.1 ribonuclease R family protein -
  IOO20_RS03625 ilvC 671550..672572 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  IOO20_RS03630 - 672576..673658 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  IOO20_RS03635 dprA 673648..674421 (+) 774 WP_002867721.1 DNA-processing protein DprA Machinery gene
  IOO20_RS03640 dprB 674418..674801 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  IOO20_RS03645 - 674830..675669 (+) 840 WP_011049748.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  IOO20_RS03650 msrA 675845..676342 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  IOO20_RS03655 ppa 676384..676902 (-) 519 WP_002867724.1 inorganic diphosphatase -
  IOO20_RS03660 adk 676912..677490 (-) 579 WP_011049749.1 adenylate kinase -
  IOO20_RS03665 aspS 677487..679238 (-) 1752 WP_011049750.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=454336 IOO20_RS03640 WP_002852281.1 674418..674801(+) (dprB) [Campylobacter jejuni strain RM1221]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=454336 IOO20_RS03640 WP_002852281.1 674418..674801(+) (dprB) [Campylobacter jejuni strain RM1221]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCCTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449