Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CPBP_RS04615 Genome accession   NZ_CP054719
Coordinates   996116..997492 (+) Length   458 a.a.
NCBI ID   WP_350331694.1    Uniprot ID   A0A7L9RUE3
Organism   Candidatus Bodocaedibacter vickermanii isolate Lake Konstanz     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 991116..1002492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPBP_RS04590 (CPBP_00915) rplI 991147..991701 (+) 555 WP_350331689.1 50S ribosomal protein L9 -
  CPBP_RS04595 (CPBP_00916) - 991750..993213 (+) 1464 WP_350331690.1 replicative DNA helicase -
  CPBP_RS04600 (CPBP_00917) alr 993214..994377 (+) 1164 WP_350331691.1 alanine racemase -
  CPBP_RS04605 (CPBP_00918) - 994589..995350 (+) 762 WP_350331692.1 ABC transporter permease -
  CPBP_RS04610 (CPBP_00919) - 995358..996116 (+) 759 WP_350331693.1 ATP-binding cassette domain-containing protein -
  CPBP_RS04615 (CPBP_00920) radA 996116..997492 (+) 1377 WP_350331694.1 DNA repair protein RadA Machinery gene
  CPBP_RS04620 (CPBP_00921) - 997489..998019 (+) 531 WP_350331695.1 CvpA family protein -
  CPBP_RS04625 (CPBP_00923) - 998083..999186 (+) 1104 WP_350331696.1 DUF2066 domain-containing protein -
  CPBP_RS04630 (CPBP_00924) - 999190..999891 (+) 702 WP_350331697.1 CDP-alcohol phosphatidyltransferase family protein -
  CPBP_RS04635 (CPBP_00925) - 999893..1001002 (+) 1110 WP_350331698.1 AI-2E family transporter -
  CPBP_RS04640 (CPBP_00926) - 1000986..1001654 (+) 669 WP_350331699.1 DnaA/Hda family protein -
  CPBP_RS04645 (CPBP_00927) - 1001662..1001895 (+) 234 WP_350331700.1 succinate dehydrogenase assembly factor 2 -
  CPBP_RS04650 (CPBP_00928) - 1001945..1002253 (+) 309 WP_350331701.1 hypothetical protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49252.93 Da        Isoelectric Point: 6.9926

>NTDB_id=454183 CPBP_RS04615 WP_350331694.1 996116..997492(+) (radA) [Candidatus Bodocaedibacter vickermanii isolate Lake Konstanz]
MAKTHKTFACQACGSVYPRWVGKCEACGEWNTIVEEVESAPIPKGMKPGKSSGLDLVALNGPMKSFPRYVSSIEEFDRVC
GGGLVPGSIVLIGGDPGIGKSTLLLQVSAALSSDLSVAYVSGEEAVDQIRMRAKRLGLSESQVMLAASSNVRDILSTLDV
VNGPKVAVVDSIQTMYIDNVESAPGTVTQVRGCTAELVRVAKSRDLVIILVGHVTKEGMIAGPRVLEHMVDAVFYFEGDR
GHQFRILRSVKNRFGAADEIGVFEMREEGLQEVTNPSSLFLENRSSELSGVSVFAGLEGSRPLLCEIQGLVAPSPLASPR
RTVVGWDAGRLSMILAVLETRCSIQMSNRDVYLNIAGGLKITEPAADLAVAACLLSSFTNTPLPEDTVIIGEIGLGGEIR
PVKQIEVRLKEAAKLGFKQAIIPATSKLSENKHNISIIAVKHLSDMMRFFNVRQKRDS

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=454183 CPBP_RS04615 WP_350331694.1 996116..997492(+) (radA) [Candidatus Bodocaedibacter vickermanii isolate Lake Konstanz]
ATGGCTAAGACACATAAAACATTTGCATGTCAAGCGTGCGGCAGTGTGTATCCCCGCTGGGTTGGAAAGTGTGAAGCCTG
TGGTGAGTGGAACACGATTGTTGAAGAGGTTGAGTCTGCGCCAATTCCTAAGGGGATGAAACCTGGAAAAAGCAGCGGAT
TGGATTTGGTTGCTTTAAATGGTCCCATGAAATCATTTCCGCGATACGTATCATCGATTGAAGAATTCGATCGCGTATGT
GGGGGTGGTTTGGTTCCGGGGTCGATTGTATTGATCGGGGGAGATCCCGGCATTGGAAAATCGACATTGTTATTGCAAGT
CAGTGCGGCGCTGTCATCAGATTTATCGGTTGCGTATGTATCGGGTGAAGAAGCGGTGGATCAGATTCGCATGCGGGCAA
AACGATTGGGGTTATCTGAAAGCCAAGTCATGTTGGCGGCATCATCAAACGTTCGGGATATTTTATCAACCTTAGACGTT
GTAAATGGCCCAAAGGTGGCTGTTGTGGACTCGATACAGACGATGTACATCGATAATGTTGAATCGGCGCCGGGTACGGT
GACGCAGGTGCGTGGGTGTACGGCGGAACTTGTTCGGGTTGCAAAATCACGTGATTTGGTCATCATCTTGGTGGGGCATG
TCACAAAAGAAGGCATGATCGCAGGTCCCAGAGTCTTAGAGCACATGGTGGATGCTGTGTTTTACTTTGAAGGTGATCGT
GGACATCAGTTTCGAATTTTACGGTCGGTGAAAAACCGATTTGGTGCAGCTGACGAAATTGGTGTATTTGAAATGCGGGA
AGAAGGATTACAAGAGGTAACAAATCCCTCATCTTTATTTCTAGAAAATCGATCTTCAGAACTCAGTGGTGTTTCAGTTT
TTGCAGGGTTAGAAGGATCCAGACCCTTATTGTGTGAAATTCAGGGGTTGGTGGCGCCATCTCCACTTGCAAGTCCACGG
CGTACCGTTGTAGGATGGGACGCAGGAAGATTGTCCATGATATTAGCGGTTCTGGAAACGCGGTGTTCTATTCAAATGAG
CAATCGGGATGTATATTTAAACATTGCCGGGGGTTTGAAAATCACAGAACCTGCGGCAGATCTAGCGGTCGCTGCGTGTT
TGTTGTCATCGTTTACGAATACACCCTTACCCGAAGACACAGTTATCATTGGTGAAATTGGGCTGGGCGGCGAAATTCGA
CCCGTTAAGCAAATCGAGGTTCGATTGAAAGAGGCGGCTAAGCTAGGGTTTAAACAAGCAATTATTCCAGCCACATCAAA
GCTATCTGAAAACAAACACAATATTAGTATTATTGCTGTTAAGCACCTTTCAGATATGATGCGATTTTTTAATGTTCGAC
AGAAAAGAGACTCATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(342-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L9RUE3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.754

99.563

0.515
  radA Streptococcus mitis NCTC 12261

47.696

94.76

0.452
  radA Streptococcus pneumoniae Rx1

47.696

94.76

0.452
  radA Streptococcus pneumoniae D39

47.696

94.76

0.452
  radA Streptococcus pneumoniae R6

47.696

94.76

0.452
  radA Streptococcus pneumoniae TIGR4

47.696

94.76

0.452
  radA Streptococcus mitis SK321

47.696

94.76

0.452