Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HUO02_RS16555 Genome accession   NZ_CP054714
Coordinates   3376703..3377392 (-) Length   229 a.a.
NCBI ID   WP_197197403.1    Uniprot ID   -
Organism   Bacillus velezensis strain KKLW     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3371703..3382392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUO02_RS16520 (HUO02_16520) fliW 3371794..3372225 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  HUO02_RS16525 (HUO02_16525) - 3372255..3372824 (-) 570 WP_023357152.1 DUF6470 family protein -
  HUO02_RS16530 (HUO02_16530) flgL 3372915..3373832 (-) 918 WP_012118569.1 flagellar hook-associated protein FlgL -
  HUO02_RS16535 (HUO02_16535) flgK 3373844..3375361 (-) 1518 WP_012118570.1 flagellar hook-associated protein FlgK -
  HUO02_RS16540 (HUO02_16540) - 3375377..3375859 (-) 483 WP_003151394.1 flagellar protein FlgN -
  HUO02_RS16545 (HUO02_16545) flgM 3375874..3376140 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  HUO02_RS16550 (HUO02_16550) - 3376210..3376629 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  HUO02_RS16555 (HUO02_16555) comFC 3376703..3377392 (-) 690 WP_197197403.1 phosphoribosyltransferase family protein Machinery gene
  HUO02_RS16560 (HUO02_16560) - 3377398..3377682 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  HUO02_RS16565 (HUO02_16565) comFA 3377740..3379125 (-) 1386 WP_012118573.1 DEAD/DEAH box helicase Machinery gene
  HUO02_RS16570 (HUO02_16570) - 3379233..3380081 (-) 849 WP_003151387.1 DegV family protein -
  HUO02_RS16575 (HUO02_16575) degU 3380179..3380868 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HUO02_RS16580 (HUO02_16580) degS 3380945..3382108 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25201.86 Da        Isoelectric Point: 8.4871

>NTDB_id=454168 HUO02_RS16555 WP_197197403.1 3376703..3377392(-) (comFC) [Bacillus velezensis strain KKLW]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSKFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSATGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=454168 HUO02_RS16555 WP_197197403.1 3376703..3377392(-) (comFC) [Bacillus velezensis strain KKLW]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCAAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CACAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594