Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   I33_RS11675 Genome accession   NC_017195
Coordinates   2366687..2367490 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2361687..2372490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS11655 (I33_2496) glpQB 2362865..2363596 (-) 732 WP_014477293.1 glycerophosphodiester phosphodiesterase -
  I33_RS11660 (I33_2497) yqiI 2363675..2364295 (-) 621 WP_080009823.1 N-acetylmuramoyl-L-alanine amidase -
  I33_RS11665 (I33_2498) - 2364315..2364611 (-) 297 WP_014477295.1 hypothetical protein -
  I33_RS20985 (I33_2499) - 2364919..2365072 (+) 154 Protein_2331 hypothetical protein -
  I33_RS11670 (I33_2500) yqiG 2365145..2366263 (+) 1119 WP_041519388.1 NADH-dependent flavin oxidoreductase -
  I33_RS11675 (I33_2502) spo0A 2366687..2367490 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  I33_RS11680 (I33_2503) spoIVB 2367766..2369046 (-) 1281 WP_014477299.1 SpoIVB peptidase -
  I33_RS11685 (I33_2504) recN 2369221..2370951 (-) 1731 WP_014477300.1 DNA repair protein RecN Machinery gene
  I33_RS11690 (I33_2505) argR 2370988..2371437 (-) 450 WP_014114358.1 arginine repressor ArgR -
  I33_RS11695 (I33_2506) yqxC 2371535..2372380 (-) 846 WP_014477301.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=45411 I33_RS11675 WP_003226427.1 2366687..2367490(-) (spo0A) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=45411 I33_RS11675 WP_003226427.1 2366687..2367490(-) (spo0A) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGTTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment