Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HUG20_RS14160 Genome accession   NZ_CP054706
Coordinates   2841790..2842743 (-) Length   317 a.a.
NCBI ID   WP_200085288.1    Uniprot ID   A0A7T6ZD94
Organism   Salicibibacter cibi strain NKC21-4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2836790..2847743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUG20_RS14135 (HUG20_14130) - 2836893..2837324 (-) 432 WP_200085284.1 peptidylprolyl isomerase -
  HUG20_RS14140 (HUG20_14135) - 2837622..2839493 (-) 1872 WP_200085285.1 ABC-F family ATP-binding cassette domain-containing protein -
  HUG20_RS14145 (HUG20_14140) - 2839566..2839820 (-) 255 WP_200085286.1 hypothetical protein -
  HUG20_RS14150 (HUG20_14145) - 2840038..2840850 (-) 813 WP_281392426.1 ATP-binding cassette domain-containing protein -
  HUG20_RS14155 (HUG20_14150) - 2840847..2841800 (-) 954 WP_200085287.1 iron chelate uptake ABC transporter family permease subunit -
  HUG20_RS14160 (HUG20_14155) ceuB 2841790..2842743 (-) 954 WP_200085288.1 ABC transporter permease Machinery gene
  HUG20_RS14165 (HUG20_14160) - 2843311..2844270 (-) 960 WP_200085289.1 hypothetical protein -
  HUG20_RS14170 (HUG20_14165) - 2844398..2844610 (-) 213 WP_200085290.1 hypothetical protein -
  HUG20_RS14175 (HUG20_14170) - 2844979..2845401 (-) 423 WP_200085291.1 organic hydroperoxide resistance protein -
  HUG20_RS14180 (HUG20_14175) - 2845519..2846679 (-) 1161 WP_200085292.1 FtsW/RodA/SpoVE family cell cycle protein -
  HUG20_RS14185 (HUG20_14180) - 2847375..2847692 (+) 318 WP_200085293.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34989.13 Da        Isoelectric Point: 9.6684

>NTDB_id=454092 HUG20_RS14160 WP_200085288.1 2841790..2842743(-) (ceuB) [Salicibibacter cibi strain NKC21-4]
MRIKYLLPLLIVLSITSLFIGVQEISPADIFNLNDEQVQTILISRIPRLISIVIVGVSLSVCGLIMQQLTQNKFVSPTTA
GTMDWARLGILVAILVFSQSGTLERMFVAMLFALFGTFLFMKILERIRYKNVIFVPLVGLMLGSVVEAITTFFAYQYDLM
QSLSSWMQGSFSLVVRGNYEILYIGIPLVIIAFLFANRFTVAGMGRDFSANLGMNYNRIMNAGLFIVAIITATVVVTIGS
IPFLGLIIPNIVSIMKGDNLKNSLPHTALFGAIFLLVCDILGRVIIYPYEVPIGLMVGIIGSAIFLYLLLRRNAHAG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=454092 HUG20_RS14160 WP_200085288.1 2841790..2842743(-) (ceuB) [Salicibibacter cibi strain NKC21-4]
ATGAGAATAAAATACTTACTGCCACTGCTCATTGTTTTATCGATTACATCCCTATTTATCGGCGTGCAGGAGATATCACC
AGCCGACATTTTCAACCTCAATGACGAACAGGTTCAGACCATTCTTATCAGCCGAATTCCGCGTTTGATAAGTATTGTCA
TTGTCGGTGTTAGCTTGAGTGTTTGCGGGCTGATCATGCAGCAGCTCACACAGAACAAATTTGTTTCTCCCACAACTGCC
GGAACGATGGATTGGGCGCGACTCGGCATTCTTGTCGCGATCCTCGTGTTCTCGCAATCGGGTACGTTGGAGCGAATGTT
CGTTGCCATGCTGTTTGCCCTCTTTGGAACGTTCCTTTTCATGAAAATTTTGGAACGTATCCGTTATAAAAATGTGATTT
TCGTTCCGCTGGTCGGTCTGATGCTCGGCAGCGTTGTCGAAGCCATTACGACATTTTTTGCCTATCAATATGACTTGATG
CAAAGCCTGTCTTCTTGGATGCAAGGGAGTTTTTCGCTTGTCGTCAGGGGGAACTATGAGATTTTGTATATCGGCATTCC
GCTTGTGATCATTGCCTTCTTATTCGCCAACCGCTTTACGGTGGCCGGGATGGGGCGAGATTTTTCTGCCAATTTGGGGA
TGAACTACAATCGGATTATGAACGCCGGGTTATTCATCGTCGCGATTATTACGGCAACGGTTGTCGTCACGATCGGATCG
ATTCCATTTTTGGGGTTGATCATTCCGAATATCGTATCGATCATGAAAGGCGATAACCTAAAAAACAGCCTTCCACATAC
AGCTTTATTCGGAGCGATCTTTTTATTAGTCTGTGATATATTGGGAAGGGTCATTATCTATCCGTATGAGGTGCCGATCG
GGCTTATGGTGGGCATTATTGGTAGCGCCATATTTCTTTACCTTCTCTTAAGGAGAAACGCTCATGCAGGCTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T6ZD94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.165

99.685

0.53