Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HUG20_RS07720 Genome accession   NZ_CP054706
Coordinates   1501727..1503439 (+) Length   570 a.a.
NCBI ID   WP_200089786.1    Uniprot ID   A0A7T6ZA86
Organism   Salicibibacter cibi strain NKC21-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1496727..1508439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUG20_RS07695 (HUG20_07695) xseB 1496740..1496997 (+) 258 WP_281392534.1 exodeoxyribonuclease VII small subunit -
  HUG20_RS07700 (HUG20_07700) - 1497175..1498044 (+) 870 WP_343073215.1 polyprenyl synthetase family protein -
  HUG20_RS07705 (HUG20_07705) dxs 1498479..1500368 (+) 1890 WP_200089780.1 1-deoxy-D-xylulose-5-phosphate synthase -
  HUG20_RS07710 (HUG20_07710) - 1500365..1501162 (+) 798 WP_200089782.1 TlyA family RNA methyltransferase -
  HUG20_RS07715 (HUG20_07715) argR 1501222..1501671 (+) 450 WP_200089784.1 transcriptional regulator ArgR -
  HUG20_RS07720 (HUG20_07720) recN 1501727..1503439 (+) 1713 WP_200089786.1 DNA repair protein RecN Machinery gene
  HUG20_RS07725 (HUG20_07725) spoIVB 1503593..1504828 (+) 1236 WP_246476575.1 SpoIVB peptidase -
  HUG20_RS07730 (HUG20_07730) spo0A 1505024..1505818 (+) 795 WP_200089788.1 sporulation transcription factor Spo0A -
  HUG20_RS07735 (HUG20_07735) - 1506669..1506896 (-) 228 WP_200089791.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 570 a.a.        Molecular weight: 63823.96 Da        Isoelectric Point: 4.7668

>NTDB_id=454087 HUG20_RS07720 WP_200089786.1 1501727..1503439(+) (recN) [Salicibibacter cibi strain NKC21-4]
MLEELTIRNFAIIEKLTIPFGSGLTVLTGETGAGKSIIIDALGLLAGGRGSVDFVRHDSKKAEIEGLFIVSNDHLAYERM
ASAGIECEEGMIVLRREISRKGKSVCRVNGHLVTLTTLRSIGQTLVDIHGQHEHQELLQMDKHSGMVDAYANSTLFALKS
EYEDHYDAYLSMKNELQRLRNSDRENIQRLDLIQYQLEEIEQAALVDPDEDEQLEQERYKLAHAEKLYELLQYAYTYLHD
EGKGLQWVRESASHLKEASDIDPALMQTSEQVNSSFYMIEEASYSIRDHIDQLDFDPARLEQIESRLAEIEQLKRKYGGS
ITEILTFADEIAREQEALVNLDEHIRHYEEKLNEKATDLFSAANALTIGRKEAAKTLSEAVERELADLFMEKTRFSVFFQ
APVQGEEVQCDGQVKTFTRDGQERLEFYMSPNAGEPEKALAKIASGGEISRIMLALKRILSHSSQRTALIFDEVDTGVSG
RVAQAIGEKIAAIATAETQVLCITHLPQVAALASTHMHIAKEEEKGRVHTTITELGDTARVNEVARMLSGSAVTTATREN
ARELLNIATP

Nucleotide


Download         Length: 1713 bp        

>NTDB_id=454087 HUG20_RS07720 WP_200089786.1 1501727..1503439(+) (recN) [Salicibibacter cibi strain NKC21-4]
TTGCTTGAAGAACTAACGATTCGTAATTTTGCGATCATCGAGAAGCTGACGATCCCGTTTGGGTCGGGGCTAACCGTGCT
TACCGGGGAAACAGGTGCTGGAAAATCGATCATTATCGACGCTCTCGGCTTGTTGGCAGGCGGCCGCGGATCTGTAGATT
TTGTGCGCCATGACAGTAAAAAGGCGGAAATTGAAGGTCTGTTTATCGTGTCGAACGACCATTTAGCTTATGAACGAATG
GCATCTGCCGGCATCGAGTGTGAAGAGGGAATGATCGTTTTGCGCAGAGAGATTTCCCGGAAAGGGAAGAGCGTCTGCAG
GGTTAATGGGCATCTTGTTACATTGACGACGTTACGGTCGATTGGTCAAACATTGGTGGATATTCATGGGCAGCATGAAC
ATCAGGAATTGTTGCAAATGGACAAGCATAGCGGAATGGTCGATGCATATGCCAATTCGACATTGTTTGCGCTAAAATCC
GAATATGAAGATCACTATGATGCGTATTTGTCGATGAAAAATGAATTGCAACGCTTACGCAACAGCGATCGTGAAAATAT
CCAGCGGCTCGACCTCATTCAATACCAACTGGAAGAAATTGAACAGGCAGCATTAGTTGATCCTGATGAAGACGAGCAGT
TGGAACAAGAACGCTATAAGTTGGCGCATGCAGAAAAACTTTACGAGCTTCTGCAATATGCCTATACGTATTTGCACGAT
GAGGGGAAAGGATTGCAGTGGGTGAGAGAATCCGCTAGCCACCTGAAAGAGGCTAGCGATATAGACCCGGCGTTAATGCA
AACGAGCGAACAAGTGAATTCCAGTTTTTATATGATTGAAGAAGCCTCTTATTCCATCCGAGACCACATTGACCAACTCG
ATTTTGACCCAGCTCGATTGGAGCAAATCGAAAGCCGATTGGCCGAAATCGAACAACTGAAGCGTAAATACGGGGGATCG
ATTACAGAAATATTGACATTTGCCGATGAAATCGCCCGGGAACAAGAAGCACTTGTGAATTTGGATGAGCACATCCGCCA
CTATGAAGAGAAATTAAACGAAAAAGCCACCGATCTTTTTTCTGCAGCCAATGCCCTTACAATAGGGAGGAAGGAAGCTG
CAAAAACGCTTTCGGAAGCAGTCGAACGCGAACTGGCCGATTTGTTTATGGAAAAAACGCGGTTTTCCGTATTTTTTCAA
GCTCCGGTTCAAGGAGAGGAAGTGCAATGCGATGGCCAGGTAAAAACATTTACAAGGGATGGGCAAGAACGTCTCGAGTT
TTACATGTCGCCTAATGCCGGCGAACCGGAGAAAGCTTTGGCAAAAATCGCGTCAGGCGGAGAAATTTCCCGAATCATGC
TCGCCCTAAAGCGAATATTATCACATTCATCGCAGCGTACGGCGTTGATTTTTGATGAAGTGGACACAGGGGTAAGCGGA
CGGGTCGCGCAAGCCATTGGCGAAAAAATCGCTGCGATTGCTACCGCTGAAACGCAAGTGCTCTGCATTACCCATTTGCC
GCAAGTTGCGGCACTTGCATCCACGCACATGCATATCGCCAAAGAGGAAGAAAAAGGACGTGTACACACGACGATTACCG
AACTCGGCGATACAGCACGGGTCAATGAGGTGGCACGTATGCTTTCGGGAAGCGCGGTAACAACAGCAACGCGAGAAAAT
GCGCGTGAACTGTTGAACATTGCAACACCATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T6ZA86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.601

100

0.488