Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HUG15_RS16805 Genome accession   NZ_CP054705
Coordinates   3307680..3308633 (-) Length   317 a.a.
NCBI ID   WP_200124193.1    Uniprot ID   A0A7T6Z4X5
Organism   Salicibibacter cibarius strain NKC5-3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3302680..3313633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUG15_RS16785 (HUG15_16765) - 3303039..3303470 (-) 432 WP_200124190.1 peptidylprolyl isomerase -
  HUG15_RS16790 (HUG15_16770) - 3303868..3305739 (-) 1872 WP_200124191.1 ABC-F family ATP-binding cassette domain-containing protein -
  HUG15_RS16795 (HUG15_16775) - 3305928..3306740 (-) 813 WP_281393538.1 ATP-binding cassette domain-containing protein -
  HUG15_RS16800 (HUG15_16780) - 3306737..3307690 (-) 954 WP_200124192.1 iron chelate uptake ABC transporter family permease subunit -
  HUG15_RS16805 (HUG15_16785) ceuB 3307680..3308633 (-) 954 WP_200124193.1 ABC transporter permease Machinery gene
  HUG15_RS16810 (HUG15_16790) - 3308974..3309372 (+) 399 WP_200124194.1 hypothetical protein -
  HUG15_RS16815 (HUG15_16795) - 3309697..3310932 (+) 1236 WP_200124195.1 ISAzo13 family transposase -
  HUG15_RS16820 (HUG15_16800) - 3311247..3311666 (-) 420 WP_200124196.1 cytidine deaminase -
  HUG15_RS16825 (HUG15_16805) - 3312027..3312560 (-) 534 WP_200124197.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35065.20 Da        Isoelectric Point: 9.6803

>NTDB_id=454062 HUG15_RS16805 WP_200124193.1 3307680..3308633(-) (ceuB) [Salicibibacter cibarius strain NKC5-3]
MRIKYLLPLLIVLSITSLFIGVQEISPTDIFNLNDEQVQTIIISRLPRLLSIIIVGVSLSVCGLIMQQLTQNKFVSPTTA
GTMDWARLGILVAILVFSQAGTMERMFVAMLFALFGTFLFMKILERIRYKNVIFVPLVGLMLGSVVEAITTFFAYQYDLM
QSLSSWMQGSFSLVVRGNYEILYIGIPLVIIAFLFANRFTVAGMGRDFSANLGMNYNRIMNAGLFIVAIITATVVVTIGS
IPFLGLIIPNIVSIMKGDNLRNSLPHTALFGAIFLLACDILGRVIIYPYEVPIGLMVGIIGSAIFIYLLLRRNTHAG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=454062 HUG15_RS16805 WP_200124193.1 3307680..3308633(-) (ceuB) [Salicibibacter cibarius strain NKC5-3]
ATGAGAATAAAATACTTACTGCCACTGCTCATTGTTTTATCGATCACATCACTATTTATTGGCGTGCAGGAGATATCACC
AACCGACATTTTCAATCTCAATGATGAACAGGTTCAGACCATTATTATCAGCCGTCTTCCGCGATTGCTGAGTATTATCA
TTGTCGGTGTTAGTTTAAGTGTTTGCGGGCTGATCATGCAGCAGCTCACACAGAACAAATTTGTTTCTCCCACAACCGCC
GGAACGATGGATTGGGCACGACTCGGCATTCTCGTCGCGATCCTCGTGTTCTCGCAAGCGGGTACGATGGAGCGAATGTT
TGTTGCCATGTTATTTGCCCTGTTCGGCACGTTTCTTTTCATGAAAATTTTAGAACGTATCCGTTATAAAAATGTGATCT
TCGTCCCGCTGGTCGGTCTGATGCTCGGCAGCGTAGTCGAAGCGATCACGACATTTTTTGCTTATCAATATGATTTGATG
CAAAGCCTGTCTTCCTGGATGCAAGGGAGCTTTTCGCTTGTCGTCAGGGGGAACTATGAGATTTTGTATATCGGCATTCC
GCTTGTGATCATTGCCTTTTTATTCGCCAATCGGTTTACGGTTGCCGGGATGGGGCGAGATTTTTCTGCCAATTTGGGGA
TGAACTACAATCGGATTATGAACGCCGGGCTATTCATCGTCGCGATTATTACGGCAACGGTTGTCGTCACGATCGGATCG
ATCCCATTTTTGGGGTTGATCATTCCGAATATCGTATCGATCATGAAAGGCGATAATCTAAGGAACAGCCTTCCGCACAC
GGCTTTATTCGGAGCCATCTTTTTATTGGCTTGCGATATATTGGGAAGGGTCATTATCTATCCGTACGAGGTGCCGATCG
GGCTTATGGTGGGCATTATAGGCAGCGCCATATTTATTTACCTTCTCTTAAGGAGAAACACTCATGCAGGCTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T6Z4X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.848

99.685

0.527