Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HUG15_RS00940 Genome accession   NZ_CP054705
Coordinates   180042..181427 (+) Length   461 a.a.
NCBI ID   WP_200126405.1    Uniprot ID   A0A7T6YZQ3
Organism   Salicibibacter cibarius strain NKC5-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 175042..186427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUG15_RS00920 (HUG15_00920) - 175377..175847 (+) 471 WP_200126397.1 CtsR family transcriptional regulator -
  HUG15_RS00925 (HUG15_00925) - 175868..176410 (+) 543 WP_200126399.1 UvrB/UvrC motif-containing protein -
  HUG15_RS00930 (HUG15_00930) - 176410..177498 (+) 1089 WP_200126401.1 protein arginine kinase -
  HUG15_RS00935 (HUG15_00935) - 177495..179951 (+) 2457 WP_211202317.1 ATP-dependent Clp protease ATP-binding subunit -
  HUG15_RS00940 (HUG15_00940) radA 180042..181427 (+) 1386 WP_200126405.1 DNA repair protein RadA Machinery gene
  HUG15_RS00945 (HUG15_00945) disA 181446..182519 (+) 1074 WP_200128792.1 DNA integrity scanning diadenylate cyclase DisA -
  HUG15_RS00950 (HUG15_00950) - 182671..183789 (+) 1119 WP_200128793.1 PIN/TRAM domain-containing protein -
  HUG15_RS00955 (HUG15_00955) ispD 184045..184761 (+) 717 WP_200126407.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  HUG15_RS00960 (HUG15_00960) ispF 184733..185212 (+) 480 WP_200126408.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50475.81 Da        Isoelectric Point: 6.3766

>NTDB_id=454053 HUG15_RS00940 WP_200126405.1 180042..181427(+) (radA) [Salicibibacter cibarius strain NKC5-3]
MAKTKTKFVCQECTYESRKWMGRCPSCQNWNTLVEEIEQDEPKRPGSTVRSVGSNRPQKISQINTQDEPRMTTKLSELNR
VLGGGIVPGSLVLVGGDPGIGKSTLLLQLSTLLAEDGRKVLYISGEESVKQTKMRADRLKAKADTLYVLTETDTSLIDQA
VDMVQPDVLVIDSVQTMQTPDISSAPGSVAQVRESTSVFMSMAKSRGISVFVVGHVTKQGSIAGPKMLEHMVDAVLYFEG
ERHHTFRILRAVKNRFGSTNEIGIFDMNEEGLREVLNPSEIFLEERSEGVAGATVVASLEGTRPVLVELQALVAPTSYAN
PRRTATGVDHNRVSLLMAVLERRVGMLLQNQDAYINVAGGVKLDEPAVDLALATSIASSFRNQATRPTDVAIGEVGLTGE
IRRVSRIQERVKESAKLGFERCIIPEKNMGGWKAPDQMTCVGVGSLEEALDVMLDQRVKTW

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=454053 HUG15_RS00940 WP_200126405.1 180042..181427(+) (radA) [Salicibibacter cibarius strain NKC5-3]
ATGGCGAAAACAAAGACCAAGTTTGTTTGTCAGGAATGTACGTATGAATCCCGGAAGTGGATGGGCCGTTGCCCTTCATG
CCAGAATTGGAACACGTTAGTAGAGGAGATAGAACAGGATGAGCCGAAACGCCCGGGCAGCACGGTGCGTTCCGTTGGCA
GTAATCGCCCACAAAAAATTAGCCAGATAAATACCCAAGACGAACCGCGAATGACAACGAAATTATCAGAATTAAATCGT
GTTTTAGGAGGGGGGATTGTCCCCGGTTCCCTCGTTCTTGTCGGAGGCGACCCCGGGATCGGCAAGTCCACGCTGCTTTT
GCAACTTTCCACGCTTTTGGCTGAAGACGGAAGGAAAGTGTTATATATATCCGGAGAGGAATCGGTGAAACAAACGAAAA
TGCGTGCGGATCGTTTGAAAGCCAAAGCGGATACCTTGTACGTGCTTACCGAAACGGATACTTCATTGATTGATCAGGCA
GTGGATATGGTGCAACCGGATGTGTTGGTCATTGATTCCGTCCAAACGATGCAAACGCCGGATATTTCCTCTGCCCCCGG
AAGTGTTGCACAAGTGAGGGAATCAACATCTGTTTTTATGAGCATGGCAAAATCCCGGGGCATTTCGGTGTTCGTTGTCG
GTCACGTGACGAAACAAGGGTCGATTGCAGGACCGAAAATGTTGGAACATATGGTGGATGCGGTTTTATATTTTGAGGGG
GAACGGCATCATACATTTCGAATTTTACGGGCAGTGAAAAATCGCTTTGGTTCCACAAATGAAATCGGCATATTTGATAT
GAATGAAGAAGGTTTGCGGGAAGTGTTGAACCCGTCGGAAATTTTCTTGGAAGAGCGTTCGGAAGGGGTTGCGGGTGCAA
CTGTTGTGGCCTCCCTTGAAGGAACCCGTCCCGTGTTGGTAGAGTTGCAAGCCCTTGTTGCTCCGACCAGCTATGCTAAT
CCCCGACGTACGGCAACCGGAGTTGACCATAATCGTGTTTCCTTGCTGATGGCGGTATTGGAAAGGCGAGTAGGCATGTT
GCTTCAAAATCAAGATGCTTATATTAATGTTGCGGGTGGCGTAAAATTGGATGAACCGGCTGTAGATTTGGCACTGGCGA
CGAGTATCGCTTCGAGTTTTCGCAATCAAGCGACACGACCGACGGATGTTGCGATCGGTGAAGTAGGCTTAACGGGGGAA
ATACGCAGAGTTTCCCGTATTCAGGAGAGGGTGAAGGAAAGCGCGAAACTAGGGTTTGAACGATGTATCATTCCCGAAAA
AAATATGGGTGGCTGGAAAGCGCCCGACCAAATGACATGTGTAGGTGTTGGCTCCTTGGAAGAGGCATTGGATGTGATGC
TTGATCAACGAGTAAAAACTTGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(344-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T6YZQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.57

98.915

0.649
  radA Streptococcus mitis NCTC 12261

56.763

97.831

0.555
  radA Streptococcus pneumoniae Rx1

56.763

97.831

0.555
  radA Streptococcus pneumoniae D39

56.763

97.831

0.555
  radA Streptococcus pneumoniae R6

56.763

97.831

0.555
  radA Streptococcus pneumoniae TIGR4

56.763

97.831

0.555
  radA Streptococcus mitis SK321

56.763

97.831

0.555