Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   HUO05_RS14240 Genome accession   NZ_CP054700
Coordinates   3040495..3041502 (-) Length   335 a.a.
NCBI ID   WP_005379543.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain GS_MYPK1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3035495..3046502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUO05_RS14225 (HUO05_14225) hslU 3037697..3039028 (-) 1332 WP_005397950.1 HslU--HslV peptidase ATPase subunit -
  HUO05_RS14230 (HUO05_14230) hslV 3039052..3039603 (-) 552 WP_017820301.1 ATP-dependent protease subunit HslV -
  HUO05_RS14235 (HUO05_14235) ftsN 3039719..3040267 (-) 549 WP_017820300.1 cell division protein FtsN -
  HUO05_RS14240 (HUO05_14240) cytR 3040495..3041502 (-) 1008 WP_005379543.1 DNA-binding transcriptional regulator CytR Regulator
  HUO05_RS14245 (HUO05_14245) priA 3041827..3044031 (-) 2205 WP_017820298.1 primosomal protein N' -
  HUO05_RS14250 (HUO05_14250) rpmE 3044328..3044549 (+) 222 WP_005379546.1 50S ribosomal protein L31 -
  HUO05_RS14255 (HUO05_14255) rpsJ 3045006..3045317 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  HUO05_RS14260 (HUO05_14260) rplC 3045332..3045961 (+) 630 WP_005379555.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36892.42 Da        Isoelectric Point: 6.2447

>NTDB_id=454043 HUO05_RS14240 WP_005379543.1 3040495..3041502(-) (cytR) [Vibrio alginolyticus strain GS_MYPK1]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=454043 HUO05_RS14240 WP_005379543.1 3040495..3041502(-) (cytR) [Vibrio alginolyticus strain GS_MYPK1]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCCTTAATGAATCCAGAGAA
AGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACAGAAGAAACGCGAAAGCTCTTT
CGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTACCATTCGATGTCAGTAAGCCAG
AGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCAGAGCTCGAGCTTCCGACAGTACATATTGATAAC
CTGACCTCAGCATTTGAAGCGGTGAATTACCTGACTCAATTAGGTCATAAACGCATTGCTCAAATCTCTGGACCAGATAC
AGCAATATTGTGTCAGTTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCAATAAAGATCCACAATATA
GTGTCATTACTGAGTTTTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCAGAACCACCAACGGCT
ATTTTCTGCCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACCATCTCTCAACCTCGCTATG
AGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTCTGCTTGAA
ACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

98.204

99.701

0.979
  cytR Vibrio cholerae C6706

89.521

99.701

0.893