Detailed information NTG0454023

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HUO05_RS10215
• Genome accession: NZ_CP054700
• Coordinates: 2203275..2204261 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain GS_MYPK1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2198275..2209261

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUO05_RS10200 (HUO05_10200)	recA	2198820..2199863 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
HUO05_RS10205 (HUO05_10205)	pncC	2200064..2200546 (-)	483	WP_017633544.1	nicotinamide-nucleotide amidase	-
HUO05_RS10210 (HUO05_10210)	mutS	2200631..2203192 (+)	2562	WP_064354301.1	DNA mismatch repair protein MutS	-
HUO05_RS10215 (HUO05_10215)	rpoS	2203275..2204261 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
HUO05_RS10220 (HUO05_10220)	-	2204342..2205265 (-)	924	WP_054730358.1	peptidoglycan DD-metalloendopeptidase family protein	-
HUO05_RS10225 (HUO05_10225)	-	2205279..2205905 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HUO05_RS10230 (HUO05_10230)	surE	2205905..2206681 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
HUO05_RS10235 (HUO05_10235)	truD	2206681..2207724 (-)	1044	WP_054730361.1	tRNA pseudouridine(13) synthase TruD	-
HUO05_RS10240 (HUO05_10240)	ispF	2207770..2208246 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HUO05_RS10245 (HUO05_10245)	ispD	2208261..2208968 (-)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HUO05_RS10250 (HUO05_10250)	ftsB	2208970..2209251 (-)	282	WP_176311157.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=454023 HUO05_RS10215 WP_005380887.1 2203275..2204261(-) (rpoS) [Vibrio alginolyticus strain GS_MYPK1]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=454023 HUO05_RS10215 WP_005380887.1 2203275..2204261(-) (rpoS) [Vibrio alginolyticus strain GS_MYPK1]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGATAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCATGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAGGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGACGCTTCGGCCTACTAGGCTATGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854