Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   HUO05_RS08085 Genome accession   NZ_CP054700
Coordinates   1736921..1738327 (-) Length   468 a.a.
NCBI ID   WP_176311101.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain GS_MYPK1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1731921..1743327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUO05_RS08050 (HUO05_08050) moaE 1732426..1732881 (-) 456 WP_005380781.1 molybdopterin synthase catalytic subunit MoaE -
  HUO05_RS08055 (HUO05_08055) moaD 1732883..1733140 (-) 258 WP_005388938.1 molybdopterin synthase sulfur carrier subunit -
  HUO05_RS08060 (HUO05_08060) moaC 1733137..1733616 (-) 480 WP_005380779.1 cyclic pyranopterin monophosphate synthase MoaC -
  HUO05_RS08065 (HUO05_08065) moaB 1733643..1734155 (-) 513 WP_005388935.1 molybdenum cofactor biosynthesis protein B -
  HUO05_RS08070 (HUO05_08070) moaA 1734257..1735246 (-) 990 WP_017636052.1 GTP 3',8-cyclase MoaA -
  HUO05_RS08075 (HUO05_08075) - 1735545..1736441 (+) 897 WP_005388931.1 YvcK family protein -
  HUO05_RS08080 (HUO05_08080) luxU 1736580..1736924 (-) 345 WP_176311100.1 quorum-sensing phosphorelay protein LuxU -
  HUO05_RS08085 (HUO05_08085) luxO 1736921..1738327 (-) 1407 WP_176311101.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  HUO05_RS08090 (HUO05_08090) uvrB 1738619..1740649 (-) 2031 WP_017636056.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52209.79 Da        Isoelectric Point: 6.0784

>NTDB_id=454013 HUO05_RS08085 WP_176311101.1 1736921..1738327(-) (luxO) [Vibrio alginolyticus strain GS_MYPK1]
MQQKPEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFIRFAPDVIERFNNYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
SVTKLIEPKAMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNDKEERQKV

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=454013 HUO05_RS08085 WP_176311101.1 1736921..1738327(-) (luxO) [Vibrio alginolyticus strain GS_MYPK1]
ATGCAACAAAAACCCGAAGGCCCAAAGTCTCGTTACCTTTTAATGGTCGAGGACACCGCATCTGTTGCGGCTCTGTACCG
CTCATACCTGACACCGCTTGGCATAGATATCAATATTGTCGGCACAGGTAGGGATGCCATTGAGAGCCTAAATCATCGAA
TTCCAGATCTTATTTTACTCGATCTCCGTCTGCCAGATATGACGGGGATGGACGTTTTACATGCCGTTAAAAAGAGTCAT
CCCGACGTACCTATAATTTTTATGACCGCTCACGGTTCTATCGATACCGCTGTCGAGGCCATGCGTCATGGCTCACAAGA
CTTTTTAATCAAACCGTGTGAAGCAGACCGTTTACGTGTCACGGTTAACAATGCCATTCGTAAAGCGACTAAGCTAAAAA
ATGAAGCCGATAATCCAGGTAATCAGAGCTATCAGGGGTTTATCGGCAGTAGCCAAACCATGCAGCAGGTTTACCGTACG
ATAGATTCAGCTGCGAGCAGTAAAGCGAGTATTTTTATCACTGGTGAAAGTGGTACTGGTAAAGAGGTGTGTGCCGAGGC
TATTCACGCAGCAAGTAAACGTGGTGACAAACCTTTTATTGCAATTAACTGTGCTGCAATTCCAAAAGATTTGATTGAGA
GTGAATTGTTTGGTCACGTAAAAGGGGCCTTTACTGGTGCTGCGAATGATCGTCAAGGTGCTGCTGAGTTAGCGGATGGC
GGCACACTTTTTCTAGATGAGCTTTGTGAGATGGACTTGGATTTACAAACCAAGTTGCTACGATTTATTCAAACGGGCAC
ATTCCAAAAAGTGGGTTCCTCAAAAATGAAGAGCGTGGATGTGCGCTTTGTTTGTGCCACTAACCGTGATCCCTGGAAAG
AGGTACAAGAAGGTCGATTCCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTACCGCCTTTACGCGAA
CGAGGCGAAGATGTTATTGAAATTGCATACTCACTGTTAGGTTACATGTCACACGAAGAAGGAAAAAGCTTCATACGTTT
TGCGCCTGATGTCATCGAGCGATTCAACAACTATGAGTGGCCGGGTAACGTTCGTCAGTTACAAAACGTGCTACGCAATA
TCGTTGTTCTAAACAACGGTAAAGAGATTACGTTGGACATGTTACCGCCACCGTTGAATCAACCGCTTGACCGTCCGTCG
TCTGTGACTAAATTAATTGAGCCGAAAGCGATGACCGCATCTGAGATTATGCCATTATGGATGACGGAAAAAATGGCAAT
CGAGCAAGCGATTGAAGCATGTGATGGCAATATTCCTCGAGCGGCGGGATACCTTGATGTCAGTCCGTCGACGATTTACC
GCAAGTTACAGGCATGGAACGACAAGGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.414

95.94

0.829