Detailed information
Bioinformatically predicted
Overview
| Name | sbcB | Type | Machinery gene |
| Locus tag | HUO05_RS03545 | Genome accession | NZ_CP054700 |
| Coordinates | 776487..777908 (-) | Length | 473 a.a. |
| NCBI ID | WP_176310902.1 | Uniprot ID | - |
| Organism | Vibrio alginolyticus strain GS_MYPK1 | ||
| Function | promote homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 776057..816006 | 776487..777908 | within | 0 |
Gene organization within MGE regions
Location: 776057..816006
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUO05_RS03540 (HUO05_03540) | - | 776057..776431 (-) | 375 | WP_005397786.1 | CidA/LrgA family protein | - |
| HUO05_RS03545 (HUO05_03545) | sbcB | 776487..777908 (-) | 1422 | WP_176310902.1 | exodeoxyribonuclease I | Machinery gene |
| HUO05_RS03550 (HUO05_03550) | - | 778089..779285 (+) | 1197 | WP_176310903.1 | site-specific integrase | - |
| HUO05_RS03555 (HUO05_03555) | - | 779401..779871 (+) | 471 | WP_176310904.1 | hypothetical protein | - |
| HUO05_RS03560 (HUO05_03560) | - | 780004..780225 (+) | 222 | WP_176310905.1 | hypothetical protein | - |
| HUO05_RS03565 (HUO05_03565) | - | 780419..781237 (+) | 819 | WP_176310906.1 | HipA family kinase | - |
| HUO05_RS03570 (HUO05_03570) | - | 781238..782101 (+) | 864 | WP_176310907.1 | hypothetical protein | - |
| HUO05_RS03575 (HUO05_03575) | - | 782242..783090 (+) | 849 | WP_176310908.1 | DUF2971 domain-containing protein | - |
| HUO05_RS03580 (HUO05_03580) | - | 783249..783995 (+) | 747 | WP_176310909.1 | toll/interleukin-1 receptor domain-containing protein | - |
| HUO05_RS03585 (HUO05_03585) | - | 784062..784367 (-) | 306 | WP_176310910.1 | AlpA family transcriptional regulator | - |
| HUO05_RS03590 (HUO05_03590) | - | 784523..785221 (-) | 699 | WP_176310911.1 | hypothetical protein | - |
| HUO05_RS03595 (HUO05_03595) | - | 785266..785538 (-) | 273 | WP_176310912.1 | hypothetical protein | - |
| HUO05_RS03600 (HUO05_03600) | - | 785721..786380 (-) | 660 | WP_308414589.1 | S24 family peptidase | - |
| HUO05_RS03605 (HUO05_03605) | - | 786498..786737 (+) | 240 | WP_074191183.1 | helix-turn-helix transcriptional regulator | - |
| HUO05_RS03610 (HUO05_03610) | - | 786849..787397 (+) | 549 | WP_053807278.1 | toxin YdaT family protein | - |
| HUO05_RS26040 | - | 787457..787588 (+) | 132 | WP_255201246.1 | hypothetical protein | - |
| HUO05_RS26045 | - | 787585..788370 (+) | 786 | WP_255201247.1 | hypothetical protein | - |
| HUO05_RS03620 (HUO05_03620) | - | 788367..789098 (+) | 732 | WP_176310913.1 | ATP-binding protein | - |
| HUO05_RS03625 (HUO05_03625) | - | 789099..789680 (+) | 582 | WP_176310914.1 | hypothetical protein | - |
| HUO05_RS03630 (HUO05_03630) | - | 789714..791078 (-) | 1365 | WP_176310915.1 | P-loop NTPase fold protein | - |
| HUO05_RS03635 (HUO05_03635) | - | 791255..792592 (+) | 1338 | WP_176310916.1 | putative phage abortive infection protein | - |
| HUO05_RS03640 (HUO05_03640) | - | 792861..793574 (+) | 714 | WP_217916649.1 | hypothetical protein | - |
| HUO05_RS03645 (HUO05_03645) | - | 793760..793966 (+) | 207 | WP_053807283.1 | hypothetical protein | - |
| HUO05_RS03650 (HUO05_03650) | - | 794044..794331 (+) | 288 | WP_053807284.1 | hypothetical protein | - |
| HUO05_RS03655 (HUO05_03655) | - | 794297..794755 (+) | 459 | WP_176310918.1 | hypothetical protein | - |
| HUO05_RS03660 (HUO05_03660) | - | 794797..794982 (+) | 186 | WP_025766795.1 | hypothetical protein | - |
| HUO05_RS03665 (HUO05_03665) | - | 795310..796524 (+) | 1215 | WP_140139305.1 | tyrosine-type recombinase/integrase | - |
| HUO05_RS03670 (HUO05_03670) | - | 796973..797542 (+) | 570 | WP_025632836.1 | terminase small subunit | - |
| HUO05_RS03675 (HUO05_03675) | - | 797553..799487 (+) | 1935 | WP_176310919.1 | terminase gpA endonuclease subunit | - |
| HUO05_RS03680 (HUO05_03680) | - | 799481..800008 (+) | 528 | WP_025766792.1 | hypothetical protein | - |
| HUO05_RS03685 (HUO05_03685) | - | 800008..801567 (+) | 1560 | WP_176310920.1 | phage portal protein | - |
| HUO05_RS03690 (HUO05_03690) | - | 801533..803506 (+) | 1974 | WP_176310921.1 | phage major capsid protein | - |
| HUO05_RS03695 (HUO05_03695) | - | 803567..803758 (+) | 192 | WP_025632827.1 | hypothetical protein | - |
| HUO05_RS03700 (HUO05_03700) | - | 803751..804029 (+) | 279 | WP_176310922.1 | sugar transporter | - |
| HUO05_RS03705 (HUO05_03705) | - | 804026..804658 (+) | 633 | WP_025632824.1 | phage tail protein | - |
| HUO05_RS03710 (HUO05_03710) | gpU | 804648..805094 (+) | 447 | WP_176310923.1 | phage tail terminator protein | - |
| HUO05_RS03715 (HUO05_03715) | - | 805097..805600 (+) | 504 | WP_176310924.1 | phage tail tube protein | - |
| HUO05_RS03720 (HUO05_03720) | - | 805604..806074 (+) | 471 | WP_176310925.1 | phage minor tail protein G | - |
| HUO05_RS03725 (HUO05_03725) | - | 806140..806424 (+) | 285 | WP_025500496.1 | phage tail protein | - |
| HUO05_RS03730 (HUO05_03730) | - | 806405..808657 (+) | 2253 | WP_176310926.1 | hypothetical protein | - |
| HUO05_RS03735 (HUO05_03735) | - | 808657..809208 (+) | 552 | WP_176310927.1 | hypothetical protein | - |
| HUO05_RS03740 (HUO05_03740) | - | 809219..809671 (+) | 453 | WP_225472820.1 | DUF1833 family protein | - |
| HUO05_RS03745 (HUO05_03745) | - | 809668..810090 (+) | 423 | WP_238958875.1 | hypothetical protein | - |
| HUO05_RS03750 (HUO05_03750) | - | 810047..812806 (+) | 2760 | WP_176310928.1 | host specificity factor TipJ family phage tail protein | - |
| HUO05_RS03755 (HUO05_03755) | - | 812862..815039 (+) | 2178 | WP_176310929.1 | hypothetical protein | - |
| HUO05_RS03760 (HUO05_03760) | - | 815041..815184 (+) | 144 | WP_176310930.1 | hypothetical protein | - |
| HUO05_RS26255 (HUO05_03765) | - | 815398..816006 (-) | 609 | WP_074191204.1 | acyltransferase | - |
Sequence
Protein
Download Length: 473 a.a. Molecular weight: 54493.67 Da Isoelectric Point: 4.7788
>NTDB_id=454010 HUO05_RS03545 WP_176310902.1 776487..777908(-) (sbcB) [Vibrio alginolyticus strain GS_MYPK1]
MNNTEQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHTELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS
MNNTEQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHTELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS
Nucleotide
Download Length: 1422 bp
>NTDB_id=454010 HUO05_RS03545 WP_176310902.1 776487..777908(-) (sbcB) [Vibrio alginolyticus strain GS_MYPK1]
ATGAATAATACCGAACAGCCTACATTCTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCGGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACACTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGATTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGTCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCTGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAACGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGACGGATTCTTCTCTCCGGCCG
ATCGCGCAGCCATGGATATCATTCGGGAAACCGACCCGAACAATCTTGCCGCATTGGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCATT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCTTAA
ATGAATAATACCGAACAGCCTACATTCTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCGGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACACTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCACGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGATTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGTCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCTGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAACGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGACGGATTCTTCTCTCCGGCCG
ATCGCGCAGCCATGGATATCATTCGGGAAACCGACCCGAACAATCTTGCCGCATTGGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCATT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sbcB | Vibrio cholerae O1 biovar El Tor strain E7946 |
78.858 |
100 |
0.789 |