Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HUN01_RS20915 Genome accession   NZ_CP054698
Coordinates   4378654..4380180 (+) Length   508 a.a.
NCBI ID   WP_181927809.1    Uniprot ID   A0A7D7LIF0
Organism   Nostoc edaphicum CCNP1411     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4373654..4385180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUN01_RS20890 (HUN01_20885) - 4373836..4374546 (-) 711 WP_181927805.1 PEP-CTERM sorting domain-containing protein -
  HUN01_RS20895 (HUN01_20890) - 4375194..4375712 (-) 519 WP_181927806.1 DUF456 domain-containing protein -
  HUN01_RS20900 (HUN01_20895) - 4375868..4376791 (+) 924 WP_181927807.1 M48 family metallopeptidase -
  HUN01_RS20905 (HUN01_20900) - 4377002..4377640 (-) 639 WP_181927808.1 cofactor assembly of complex C subunit B -
  HUN01_RS20910 (HUN01_20905) rpaB 4377755..4378483 (-) 729 WP_012412029.1 response regulator transcription factor RpaB -
  HUN01_RS20915 (HUN01_20910) radA 4378654..4380180 (+) 1527 WP_181927809.1 DNA repair protein RadA Machinery gene
  HUN01_RS20920 (HUN01_20915) - 4380586..4380738 (-) 153 WP_181927810.1 hypothetical protein -
  HUN01_RS20925 (HUN01_20920) - 4381272..4381484 (-) 213 WP_181927811.1 hypothetical protein -
  HUN01_RS20930 (HUN01_20925) - 4381953..4382270 (-) 318 WP_181927812.1 hypothetical protein -
  HUN01_RS20935 (HUN01_20930) - 4382301..4384469 (-) 2169 WP_181927813.1 peptidase domain-containing ABC transporter -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54540.38 Da        Isoelectric Point: 4.8738

>NTDB_id=453974 HUN01_RS20915 WP_181927809.1 4378654..4380180(+) (radA) [Nostoc edaphicum CCNP1411]
MAKPKTFFTCNECGAESPQWFGKCPGCGTYNSLEEQISIQSSVDVPSRGGVSSWQSAQGNGKSHNKPAKARASLTFDQIT
DRQIARWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQKYRILYVTGEESGQQVKLRASRLGVSKTL
SVVNEEKVEVVVDTTLPIDPDSIGADLYVLPETDLEEILREIDSLKPNVAVIDSIQTVFFPALTSAPGSVAQVRECTAAL
MKVAKHEDVTMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVADGLREVSNPS
ELFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAATGIDYNRLVQILAVLEKRVGIPMSKLDSYVASAG
GLNVEEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKRAIVPKGTKFPDLNIEILP
VSKVIDAIIAAIPHQELTADDLEPDEDE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=453974 HUN01_RS20915 WP_181927809.1 4378654..4380180(+) (radA) [Nostoc edaphicum CCNP1411]
ATGGCAAAGCCAAAAACCTTTTTCACTTGTAATGAATGTGGAGCAGAATCGCCCCAGTGGTTTGGTAAGTGTCCAGGTTG
CGGTACTTACAACTCTCTAGAAGAACAAATTTCTATTCAATCCTCAGTAGATGTACCCAGTCGAGGGGGGGTAAGTAGTT
GGCAATCCGCTCAAGGCAATGGCAAATCTCACAATAAACCAGCTAAAGCGCGAGCCTCTTTGACATTCGATCAAATTACC
GATCGCCAAATTGCCCGCTGGGAGTCTGGTTATGGAGAATTAGATCGGGTGCTTGGGGGTGGGGTTGTCCCTGGCTCTAT
GGTGCTGATTGGTGGTGATCCGGGTATTGGTAAATCCACTTTATTGCTGCAAGTCTCTAATCAATTAGCACAGAAATATC
GCATCCTTTACGTAACTGGTGAAGAATCGGGACAGCAGGTAAAATTACGAGCTTCTCGTTTAGGAGTATCAAAAACTCTA
AGCGTGGTTAATGAGGAGAAGGTTGAAGTAGTAGTAGATACTACACTTCCTATAGACCCTGACAGTATAGGTGCAGATTT
ATATGTACTACCGGAAACAGATTTAGAAGAAATTTTACGGGAAATAGATTCTCTTAAGCCAAACGTGGCGGTGATTGATA
GTATTCAAACGGTGTTCTTTCCGGCGCTGACTTCTGCACCAGGTTCGGTGGCTCAGGTACGGGAATGTACAGCAGCATTG
ATGAAGGTGGCGAAGCATGAAGATGTCACCATGCTCATTGTGGGGCACGTCACTAAAGAAGGAGCGATCGCTGGGCCAAA
AGTTTTAGAACATTTAGTAGATACAGTGTTGTATTTTGAAGGCGATCGCTTTGCCTCTCATCGGTTATTACGCACAGTGA
AAAACCGCTTTGGCGCAACTCACGAAATCGGCATTTTTGAAATGGTTGCAGATGGATTGCGGGAAGTCTCCAATCCCTCA
GAGCTATTTTTAGGCAACCGTGACGATCCTGCTCCTGGTACTGCCATTGTTGTTGCTTGTGAAGGCACTCGCCCCATCGT
TGTGGAATTGCAAGCTTTGGTTAGTCCCACCAGTTACCCTTCCCCTCGTCGTGCTGCTACTGGTATAGATTACAACCGCC
TGGTGCAAATTCTCGCCGTCTTAGAAAAACGGGTGGGAATTCCCATGTCCAAGCTAGATTCCTACGTTGCTTCTGCGGGT
GGGTTGAATGTGGAAGAACCGGCGGTAGATTTGGGAATTGCGATCGCAATTGTTGCCAGTTTCCGCGATCGCATCGTCGA
TCCCGGTACAGTATTAATCGGTGAAGTTGGGTTAGGCGGACAAGTGCGATCGGTTTCCCAAATGGAACTGCGATTGAAAG
AAGCTGCTAAGTTGGGATTTAAACGAGCGATCGTCCCCAAAGGGACAAAATTTCCCGACTTGAATATTGAGATATTACCA
GTATCTAAAGTAATAGATGCAATTATCGCCGCAATTCCCCATCAAGAACTGACAGCAGACGATTTAGAACCCGATGAAGA
TGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(402-467)

KaiC (ATPase)

(90-296)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D7LIF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.012

97.244

0.496
  radA Streptococcus mitis SK321

45.825

96.654

0.443
  radA Streptococcus pneumoniae Rx1

47.335

92.323

0.437
  radA Streptococcus pneumoniae D39

47.335

92.323

0.437
  radA Streptococcus pneumoniae R6

47.335

92.323

0.437
  radA Streptococcus pneumoniae TIGR4

47.335

92.323

0.437
  radA Streptococcus mitis NCTC 12261

47.335

92.323

0.437