Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   JDY60_RS03350 Genome accession   NZ_CP066172
Coordinates   705508..706578 (-) Length   356 a.a.
NCBI ID   WP_000817856.1    Uniprot ID   A0A1X1HU81
Organism   Streptococcus oralis strain SF100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 700508..711578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS03330 (JDY60_03330) - 700846..701889 (+) 1044 WP_000752714.1 dihydrolipoamide acetyltransferase -
  JDY60_RS03335 (JDY60_03335) lpdA 701931..703634 (+) 1704 WP_125414564.1 dihydrolipoyl dehydrogenase -
  JDY60_RS03340 (JDY60_03340) - 703694..704683 (+) 990 WP_049484467.1 lipoate--protein ligase -
  JDY60_RS03345 (JDY60_03345) - 704788..705429 (+) 642 Protein_643 hypothetical protein -
  JDY60_RS03350 (JDY60_03350) xerS 705508..706578 (-) 1071 WP_000817856.1 tyrosine recombinase XerS Machinery gene
  JDY60_RS03355 (JDY60_03355) - 706718..707008 (-) 291 WP_001148764.1 hypothetical protein -
  JDY60_RS03360 (JDY60_03360) - 706989..707381 (-) 393 WP_000439964.1 hypothetical protein -
  JDY60_RS03365 (JDY60_03365) - 707363..708604 (-) 1242 WP_200371618.1 type II toxin-antitoxin system RelE/ParE family toxin -
  JDY60_RS03370 (JDY60_03370) - 708604..709029 (-) 426 WP_200371413.1 hypothetical protein -
  JDY60_RS03375 (JDY60_03375) - 709071..709436 (-) 366 WP_200371415.1 hypothetical protein -
  JDY60_RS03380 (JDY60_03380) - 709436..709858 (-) 423 WP_200371417.1 hypothetical protein -
  JDY60_RS03385 (JDY60_03385) - 709959..710402 (-) 444 WP_200371419.1 hypothetical protein -
  JDY60_RS03390 (JDY60_03390) - 710502..710933 (-) 432 WP_061587051.1 hypothetical protein -
  JDY60_RS03395 (JDY60_03395) - 711038..711481 (-) 444 WP_200371421.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41184.31 Da        Isoelectric Point: 9.6031

>NTDB_id=453946 JDY60_RS03350 WP_000817856.1 705508..706578(-) (xerS) [Streptococcus oralis strain SF100]
MKREILLERIDKLKQIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKMSDIPLSVLENMSKKDME
AFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDLGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEYPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=453946 JDY60_RS03350 WP_000817856.1 705508..706578(-) (xerS) [Streptococcus oralis strain SF100]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAAATCATGCCCTGGTATGTTCTGGAATACTACCAATC
CAAGCTTGCTGTGCCCTACAGTTTTACAACCTTGTACGAATATCTCAAGGAATACGATCGATTTTTCAGCTGGGTTTTAG
AGTCTGGAATTTCAAATGCTGATAAAATGTCTGATATTCCTTTATCTGTCTTGGAAAATATGTCTAAGAAAGATATGGAA
GCTTTTATCCTATATCTACGTGAACGTCCATTGCTGAATGCTAATACAACCAAGCAAGGTGTATCTCAGACGACCATCAA
TCGGACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACAGAGGAGGTTGAAAACGACCTGGGAGAACCCTATTTCT
ATCGTAATGTAATGAAGAAAGTTTCAACCAAGAAAAAGAAAGAAACACTTGCTGCTAGAGCTGAAAACATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAGGAGTACCCACAACAGCTCTCAAATCGCGCTCT
CTCATCATTTAATAAGAACAAAGAACGTGATTTGGCCATTATTGCCCTTCTCCTAGCGTCTGGTGTCCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGACCTCAATCTCAAAATGATGGTGATCGATGTCACTCGAAAAGGGGGGAAACGTGATTCT
GTCAATGTCGCTGCTTTTGCTAAGCCTTACCTAGAGAATTATCTAGCCATTCGAAATCAACGCTATAAGACGGAAAAGAC
AGATACAGCTCTCTTTTTGACCTTATATCGAGGCGTTCCCAATCGTATTGATGCTTCTAGTGTTGAAAAGATGGTTGCTA
AGTACTCTGAGGACTTCAAAGTCCGTGTAACTCCACACAAACTACGCCATACCCTGGCGACTAGGCTCTATGATGCTACT
AAATCGCAAGTTTTGGTCAGCCATCAGCTAGGACATGCCAGTACACAAGTCACTGACCTCTATACCCATATCGTCAATGA
TGAACAAAAGAATGCTTTAGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(68-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1HU81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

98.596

100

0.986