Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HUR94_RS04905 Genome accession   NZ_CP054665
Coordinates   1015368..1015997 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain IGC_EcoliInv_1.1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1010368..1020997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUR94_RS04885 ycbZ 1010769..1012529 (-) 1761 WP_000156518.1 AAA family ATPase -
  HUR94_RS04890 matP 1012715..1013167 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HUR94_RS04895 ompA 1013243..1014283 (-) 1041 WP_000750416.1 porin OmpA -
  HUR94_RS04900 sulA 1014640..1015149 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HUR94_RS04905 sxy/tfoX 1015368..1015997 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HUR94_RS04910 yccS 1015960..1018122 (-) 2163 WP_000875061.1 YccS family putative transporter -
  HUR94_RS04915 yccF 1018132..1018578 (-) 447 WP_001261235.1 YccF domain-containing protein -
  HUR94_RS04920 helD 1018701..1020755 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=453926 HUR94_RS04905 WP_000839153.1 1015368..1015997(+) (sxy/tfoX) [Escherichia coli strain IGC_EcoliInv_1.1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=453926 HUR94_RS04905 WP_000839153.1 1015368..1015997(+) (sxy/tfoX) [Escherichia coli strain IGC_EcoliInv_1.1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1