Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   I33_RS05510 Genome accession   NC_017195
Coordinates   1095816..1096394 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1090816..1101394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS05490 (I33_1171) hemAT 1091328..1092626 (-) 1299 WP_014476354.1 heme-based aerotactic transducer HemAT -
  I33_RS05495 (I33_1172) comW 1092765..1094294 (-) 1530 WP_014476355.1 FAD-dependent oxidoreductase -
  I33_RS05500 (I33_1173) yhxC 1094406..1095263 (+) 858 WP_014476356.1 SDR family oxidoreductase -
  I33_RS05505 (I33_1174) yhzC 1095291..1095524 (-) 234 WP_014476357.1 IDEAL domain-containing protein -
  I33_RS05510 (I33_1175) comK 1095816..1096394 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  I33_RS05515 (I33_1176) yhxD 1096441..1097340 (-) 900 WP_014476358.1 SDR family oxidoreductase -
  I33_RS05520 (I33_1177) yhjA 1097558..1097827 (+) 270 WP_014476359.1 excalibur calcium-binding domain-containing protein -
  I33_RS05525 (I33_1178) yhjB 1097871..1099340 (-) 1470 WP_014476360.1 sodium:solute symporter -
  I33_RS05530 (I33_1179) yhjC 1099337..1099537 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  I33_RS05535 (I33_1180) - 1099736..1100107 (-) 372 WP_014476361.1 hypothetical protein -
  I33_RS05540 (I33_1181) yhjE 1100259..1100882 (+) 624 WP_010886465.1 VTT domain-containing protein -
  I33_RS05545 (I33_1182) lepB 1100884..1101390 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=45391 I33_RS05510 WP_003245329.1 1095816..1096394(+) (comK) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=45391 I33_RS05510 WP_003245329.1 1095816..1096394(+) (comK) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTTAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAATTCCAAGATAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment