Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DPAN417_RS08790 Genome accession   NZ_CP054657
Coordinates   1766060..1767433 (-) Length   457 a.a.
NCBI ID   WP_003675938.1    Uniprot ID   -
Organism   Limosilactobacillus reuteri strain AN417     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1761060..1772433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DPAN417_RS08760 (DPAN417_08760) secE 1761537..1761713 (-) 177 WP_003675931.1 preprotein translocase subunit SecE -
  DPAN417_RS08765 (DPAN417_08765) rpmG 1761725..1761874 (-) 150 WP_003666293.1 50S ribosomal protein L33 -
  DPAN417_RS08770 (DPAN417_08770) rlmB 1761940..1762689 (-) 750 WP_003675933.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DPAN417_RS08775 (DPAN417_08775) - 1762679..1763092 (-) 414 WP_003670544.1 Mini-ribonuclease 3 -
  DPAN417_RS08780 (DPAN417_08780) cysS 1763104..1764516 (-) 1413 WP_003675935.1 cysteine--tRNA ligase -
  DPAN417_RS08785 (DPAN417_08785) - 1764890..1766041 (-) 1152 WP_003675937.1 PIN/TRAM domain-containing protein -
  DPAN417_RS08790 (DPAN417_08790) radA 1766060..1767433 (-) 1374 WP_003675938.1 DNA repair protein RadA Machinery gene
  DPAN417_RS08795 (DPAN417_08795) - 1767459..1767995 (-) 537 WP_003675940.1 hypothetical protein -
  DPAN417_RS08800 (DPAN417_08800) - 1768134..1768430 (+) 297 WP_003675942.1 GNAT family N-acetyltransferase -
  DPAN417_RS08805 (DPAN417_08805) rpiA 1768442..1769125 (+) 684 WP_003666281.1 ribose-5-phosphate isomerase RpiA -
  DPAN417_RS08810 (DPAN417_08810) - 1769154..1770494 (+) 1341 WP_003675944.1 aminopeptidase C -
  DPAN417_RS08815 (DPAN417_08815) - 1770602..1771393 (-) 792 WP_003675946.1 transporter substrate-binding domain-containing protein -
  DPAN417_RS08820 (DPAN417_08820) - 1771409..1772158 (-) 750 WP_003675947.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49923.16 Da        Isoelectric Point: 8.1257

>NTDB_id=453901 DPAN417_RS08790 WP_003675938.1 1766060..1767433(-) (radA) [Limosilactobacillus reuteri strain AN417]
MAKVRTQYVCQNCGYNSPRYLGRCPNCGEWNTLVEEQVEASSAPTKKATTTLTGLVAKPQKINEIDSTETPRVKTKLNEL
NRVLGGGIVPGSLILIGGDPGIGKSTLLLQVSGQLSDEHHRVLYVSGEESGTQIKMRAERLKVAGDDFYVYPETNMDSIR
DTIRDLKPEYVVIDSVQTMQATDVSSAIGSVSQIREVTAQLMQIAKSNNITIFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDLHHTYRILRSVKNRFGSTNELGIFEMHTNGLTEVKNPSEIFLEERLHDATGSAVVVSLEGTRPILVEIQALVTPTVY
GNAQRTATGLSRNRVSLIMAVLEKRANLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYRDKGTQPTDAFVGEVGLT
GEIRRVNRIEQRVAEAEKLGFKRIFISKNNLKGWKPSTNIQVIGVSTLKEALYLALG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=453901 DPAN417_RS08790 WP_003675938.1 1766060..1767433(-) (radA) [Limosilactobacillus reuteri strain AN417]
ATGGCAAAAGTTCGAACACAATATGTTTGCCAAAACTGTGGTTACAACTCACCACGCTACTTAGGGCGGTGTCCAAACTG
TGGTGAGTGGAATACTTTAGTAGAAGAACAGGTAGAAGCCAGTTCTGCACCAACAAAAAAAGCAACCACCACCTTAACCG
GCTTAGTTGCCAAACCACAGAAAATTAATGAGATTGATAGTACAGAGACTCCCCGCGTTAAAACAAAATTGAACGAGTTA
AATCGCGTTTTAGGTGGGGGAATCGTTCCAGGATCACTAATTCTAATTGGTGGGGATCCCGGAATCGGGAAATCCACCCT
CCTTTTACAAGTTTCTGGACAATTGAGCGATGAGCATCACCGAGTTTTATATGTGTCTGGAGAAGAAAGCGGGACACAGA
TTAAAATGCGGGCGGAACGGTTGAAGGTTGCTGGAGATGACTTTTATGTGTATCCAGAAACGAATATGGATAGTATTCGA
GACACTATTCGCGACCTCAAGCCAGAGTATGTCGTTATTGACTCCGTGCAAACGATGCAGGCAACTGATGTAAGTTCCGC
GATTGGTAGTGTATCGCAAATTCGTGAAGTTACCGCCCAGTTAATGCAAATTGCTAAAAGTAATAACATTACGATTTTTG
TTGTTGGTCATGTGACAAAGGGTGGTGCAATCGCCGGTCCAAAGATTTTAGAGCACATGGTTGATACGGTTTTGTATTTT
GAAGGAGATTTGCACCATACATATCGTATTTTGCGATCAGTGAAAAATCGATTTGGTTCAACCAACGAGCTCGGCATTTT
TGAGATGCACACAAATGGGCTGACGGAAGTAAAAAATCCATCAGAAATCTTTTTAGAAGAACGATTACATGATGCAACTG
GTTCAGCGGTGGTTGTTTCATTAGAAGGAACGCGACCGATTTTAGTTGAAATTCAGGCGCTGGTAACACCGACCGTTTAT
GGGAATGCACAGCGAACTGCTACCGGTTTGAGTCGAAACCGAGTATCATTGATAATGGCGGTATTAGAGAAACGTGCTAA
CCTAATGCTTCAAAATCAAGATGCTTACTTAAAAGCAGCTGGGGGCGTTAAGTTAGATGAGCCAGCGATTGATTTAGCAA
TTGCGGTAAGCATTGCCTCCAGTTACCGGGATAAAGGTACTCAACCAACTGACGCATTTGTCGGTGAAGTAGGTTTAACT
GGGGAAATTCGCCGGGTAAATCGCATTGAACAGCGGGTTGCTGAAGCAGAAAAACTTGGCTTTAAACGGATCTTTATTTC
CAAAAATAATTTAAAGGGTTGGAAACCGTCAACTAATATTCAAGTAATTGGTGTCTCAACCCTGAAAGAAGCGTTATATT
TAGCGTTGGGGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

66.372

98.906

0.656
  radA Streptococcus mitis SK321

66.372

98.906

0.656
  radA Streptococcus pneumoniae Rx1

66.15

98.906

0.654
  radA Streptococcus pneumoniae D39

66.15

98.906

0.654
  radA Streptococcus pneumoniae R6

66.15

98.906

0.654
  radA Streptococcus pneumoniae TIGR4

66.15

98.906

0.654
  radA Bacillus subtilis subsp. subtilis str. 168

62.801

100

0.628