Detailed information NTG0453874

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: FOB47_RS16255
• Genome accession: NZ_CP054626
• Coordinates: 1306796..1308160 (+)
• Length: 454 a.a.
• NCBI ID: WP_174781544.1
• Uniprot ID: -
• Organism: Cupriavidus gilardii strain FDAARGOS_639
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1301796..1313160

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOB47_RS16240 (FOB47_16240)	-	1302425..1303600 (+)	1176	WP_174781542.1	DUF1853 family protein	-
FOB47_RS16245 (FOB47_16245)	lplT	1303772..1305091 (-)	1320	WP_174781543.1	lysophospholipid transporter LplT	-
FOB47_RS16250 (FOB47_16250)	alr	1305609..1306742 (+)	1134	WP_053821642.1	alanine racemase	-
FOB47_RS16255 (FOB47_16255)	radA	1306796..1308160 (+)	1365	WP_174781544.1	DNA repair protein RadA	Machinery gene
FOB47_RS16260 (FOB47_16260)	-	1308222..1308668 (-)	447	WP_315904144.1	hypothetical protein	-
FOB47_RS16265 (FOB47_16265)	-	1308988..1309473 (+)	486	WP_006577845.1	disulfide bond formation protein B	-
FOB47_RS16270 (FOB47_16270)	-	1309519..1311360 (+)	1842	WP_174781545.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 454 a.a.
• Molecular weight: 48478.59 Da
• Isoelectric Point: 6.9987

>NTDB_id=453874 FOB47_RS16255 WP_174781544.1 1306796..1308160(+) (radA) [Cupriavidus gilardii strain FDAARGOS_639]
MAKTKTVYTCTECGGSVPRWQGQCPHCQQWNTLVESVPETPSARRFQPLAASSTVQRLSEIEASDVPRFTSGIEEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQALANLAASRRVLYVSGEESGAQIALRAQRLGIDSPSLGLLAEIQLEKIQATLDA
DKPEVAVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKSSGTTIILVGHVTKEGSLAGPRVLEHIVDTVLYFEGDTH
SSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSQHEQTVSGSCVMVTQEGSRPLLVEIQALVDAAHVPNPRR
LAVGLEQNRLALLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEIRP
SPRGQDRLREAAKLGFTQAVIPKANAPKQSIDGLEVIAVERIEQAIERVRYLDG

Nucleotide

• Length: 1365 bp

>NTDB_id=453874 FOB47_RS16255 WP_174781544.1 1306796..1308160(+) (radA) [Cupriavidus gilardii strain FDAARGOS_639]
TTGGCAAAGACCAAGACCGTTTACACCTGTACCGAATGCGGCGGCTCCGTGCCGCGCTGGCAGGGGCAGTGCCCGCATTG
CCAGCAATGGAACACGCTGGTCGAGAGCGTGCCCGAGACGCCGTCGGCGCGGCGCTTCCAGCCGCTGGCAGCCTCGAGCA
CGGTGCAGCGGCTGTCGGAAATCGAGGCGTCCGACGTGCCGCGCTTTACCAGCGGCATCGAGGAATTCGACCGGGTGCTC
GGCGGCGGGCTGGTCGCCGGCGGCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCCACGCTGCTGCTGCAGGC
GCTGGCGAATCTGGCGGCCAGCCGGCGCGTGCTCTATGTCAGCGGCGAGGAGTCGGGCGCGCAGATCGCGCTGCGCGCGC
AGCGGCTCGGCATCGACAGTCCGAGCCTGGGGCTGCTGGCCGAGATCCAGCTCGAGAAGATCCAGGCGACGCTCGACGCC
GACAAGCCCGAGGTCGCGGTGATCGACTCGATCCAGACGCTATACTCGGAGGCGCTGACATCGGCGCCGGGCTCGGTGGC
ACAGGTGCGCGAATGCGCGGCGCAGCTGACGCGGATTGCCAAGAGCAGCGGCACCACCATCATCCTGGTCGGCCATGTGA
CCAAGGAAGGCAGCCTGGCCGGGCCGCGCGTGCTCGAGCATATCGTCGACACGGTGCTGTATTTCGAGGGCGACACGCAT
TCGTCGCACCGGCTGATCCGCGCATTCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGCGATGACCGAGCG
CGGCCTGCGCGGCATCAGCAATCCGTCGGCGCTGTTCCTGTCCCAGCATGAGCAGACCGTGTCCGGGTCCTGCGTGATGG
TCACGCAGGAGGGCTCGCGCCCGCTGCTGGTCGAGATCCAGGCGCTGGTCGATGCGGCGCACGTGCCGAATCCGCGCCGC
CTGGCGGTGGGCCTGGAGCAGAACCGGCTGGCGCTGCTGCTGGCCGTGCTGCACCGCCACGCCGGCATCGCCTGCTTCGA
CCAGGACGTGTTCCTCAATGCGGTGGGCGGGGTCAAGATCACCGAGCCGGCCGCGGACCTGGCGGTGCTGCTGTCGATCC
ATTCGTCGATGCGCAACAAGCCCTTGCCGCGCGGACTGGTGGTATTCGGCGAGGTGGGGCTGGCCGGCGAGATCCGCCCA
AGCCCGCGCGGCCAGGACCGGCTGCGCGAGGCCGCCAAGCTGGGCTTTACGCAGGCGGTGATCCCGAAGGCCAATGCGCC
GAAGCAGTCGATCGACGGGCTCGAGGTGATCGCCGTCGAGCGGATCGAGCAGGCGATCGAGCGGGTGCGCTACCTCGACG
GCTAG

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (59-217)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	50.877	100	0.511
radA	Streptococcus mitis SK321	46.256	100	0.463
radA	Streptococcus pneumoniae D39	46.154	100	0.463
radA	Streptococcus pneumoniae TIGR4	46.154	100	0.463
radA	Streptococcus pneumoniae R6	46.154	100	0.463
radA	Streptococcus pneumoniae Rx1	46.154	100	0.463
radA	Streptococcus mitis NCTC 12261	45.934	100	0.46