Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FOB47_RS11905 Genome accession   NZ_CP054626
Coordinates   370672..372150 (-) Length   492 a.a.
NCBI ID   WP_174782403.1    Uniprot ID   -
Organism   Cupriavidus gilardii strain FDAARGOS_639     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 365672..377150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB47_RS11875 (FOB47_11875) - 366067..366720 (-) 654 WP_053821032.1 LON peptidase substrate-binding domain-containing protein -
  FOB47_RS11880 (FOB47_11880) rapZ 366805..367686 (-) 882 WP_053821033.1 RNase adapter RapZ -
  FOB47_RS11885 (FOB47_11885) - 367923..368213 (-) 291 WP_053821034.1 PsiF family protein -
  FOB47_RS11890 (FOB47_11890) hprK 368390..369361 (-) 972 WP_006576781.1 HPr(Ser) kinase/phosphatase -
  FOB47_RS11895 (FOB47_11895) ptsN 369434..369889 (-) 456 WP_053821035.1 PTS IIA-like nitrogen regulatory protein PtsN -
  FOB47_RS11900 (FOB47_11900) hpf 370269..370622 (-) 354 WP_053821036.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FOB47_RS11905 (FOB47_11905) rpoN/rpoN1 370672..372150 (-) 1479 WP_174782403.1 RNA polymerase factor sigma-54 Machinery gene
  FOB47_RS11910 (FOB47_11910) lptB 372342..373166 (-) 825 WP_006579161.1 LPS export ABC transporter ATP-binding protein -
  FOB47_RS11915 (FOB47_11915) lptA 373249..373878 (-) 630 WP_053822969.1 lipopolysaccharide transport periplasmic protein LptA -
  FOB47_RS11920 (FOB47_11920) lptC 373959..374585 (-) 627 WP_053821038.1 LPS export ABC transporter periplasmic protein LptC -
  FOB47_RS11925 (FOB47_11925) - 374594..375577 (-) 984 WP_053822970.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54861.24 Da        Isoelectric Point: 5.0336

>NTDB_id=453870 FOB47_RS11905 WP_174782403.1 370672..372150(-) (rpoN/rpoN1) [Cupriavidus gilardii strain FDAARGOS_639]
MKPSLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVEQALTENPLLERENDWIESPLRVAADGSVNVQTATTTSPAEPA
APADSHADGAAAADEGYADGAGDDYGGDWSLDDFARRPQSDEDEKTPLQLRDAEPTLREYLMEQLTPLKISTRDKGLAIF
LIESLDDDGYLSASLEEILSELPEELEFELDEVHAMLTLLQSFDPPGVGARNAAECLSLQLRRIEHPQRELAMTIVRHHL
ELLAARDYTRLKKALQVDDMQLKAAHELIRSLAPYPGHAYSRPEADFVVPDVFVRKSGHNWIAQLNPDVMPRLRINDMYA
QILRGAKGDTGAAGLQQKLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFTHGEIAMRPLVLREIADTLGLHESTISRV
TTNKYMATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLIGAEDPRNPLSDSRIAELLGEQGFVVARRTVAKYREA
LKIPAVNLRKSL

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=453870 FOB47_RS11905 WP_174782403.1 370672..372150(-) (rpoN/rpoN1) [Cupriavidus gilardii strain FDAARGOS_639]
ATGAAACCGTCGCTACAGCTACGCCTCTCCCAGCATCTGGCCCTGACGCCGCAGCTGCAGCAGTCCATCCGGCTGTTGCA
GTTGTCCACGCTGGAACTGCAACAGGAAGTCGAGCAGGCGCTGACCGAGAATCCGCTGCTCGAACGCGAAAACGACTGGA
TCGAAAGCCCGCTGCGCGTTGCCGCCGACGGGTCGGTCAATGTGCAGACCGCCACCACGACCTCGCCCGCCGAACCGGCG
GCGCCCGCGGACTCGCACGCGGACGGCGCCGCCGCAGCCGACGAAGGCTATGCCGACGGCGCGGGCGACGATTATGGCGG
CGACTGGAGCCTGGACGACTTCGCCCGCCGTCCGCAAAGCGATGAGGACGAGAAAACACCGCTGCAATTGCGCGATGCCG
AGCCCACGCTGCGCGAATATCTGATGGAGCAATTGACGCCGCTGAAAATCTCCACGCGCGACAAGGGCCTGGCGATTTTC
CTGATCGAATCGCTCGACGACGACGGTTATCTGAGCGCGTCGCTCGAGGAAATCCTGTCCGAATTGCCGGAAGAGCTCGA
ATTCGAACTCGACGAAGTGCATGCGATGCTGACGCTGCTGCAAAGCTTCGATCCGCCCGGGGTCGGCGCACGCAACGCAG
CAGAGTGCCTGTCGCTGCAACTGCGCCGCATCGAACATCCGCAGCGCGAGCTGGCGATGACCATCGTCCGCCATCACCTC
GAACTGCTGGCCGCGCGCGACTACACACGGCTGAAGAAGGCGCTGCAGGTCGACGACATGCAGCTGAAGGCCGCGCACGA
GTTGATCCGTTCGCTCGCGCCATATCCCGGCCACGCCTACAGCCGGCCGGAAGCGGACTTCGTGGTGCCCGATGTATTCG
TGCGCAAGAGCGGCCACAACTGGATCGCCCAGCTCAATCCCGATGTGATGCCGCGGCTACGCATCAACGACATGTATGCG
CAGATCTTGCGCGGTGCGAAAGGCGATACCGGCGCCGCGGGATTGCAGCAGAAACTGCAGGAGGCGCGCTGGCTCATCAA
AAATATCCAGCAGCGTTTCGACACCATTTTGCGCGTCGCACAAGCCATCGTGGAGCGGCAAAAGAATTTCTTTACGCACG
GCGAAATTGCGATGCGCCCCTTGGTTTTGAGGGAGATAGCCGATACACTGGGTCTACACGAGTCGACTATTTCTCGTGTG
ACGACCAACAAGTACATGGCCACCCCGATGGGGACATTCGAGCTGAAATATTTTTTCGGCAGCCATGTATCGACCGAGAC
CGGCGGTGCCGCCTCTTCCACCGCAATCCGTGCGCTGATCAAGCAGCTGATAGGAGCCGAAGACCCCAGAAACCCGTTGT
CCGACAGCCGGATTGCCGAACTGCTGGGGGAACAAGGCTTCGTCGTGGCGCGACGTACCGTCGCCAAATATCGTGAAGCC
TTGAAGATCCCGGCCGTGAACCTTCGCAAGTCTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(130-319)

Sigma-54, DNA binding domain (Sigma54_DBD)

(335-490)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

79.158

100

0.803