Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HUF09_RS26565 Genome accession   NZ_CP054623
Coordinates   5655958..5656515 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DL201330     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5650958..5661515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF09_RS26550 (HUF09_26565) pilY1 5651050..5654541 (-) 3492 WP_015648053.1 type 4a pilus biogenesis protein PilY1 -
  HUF09_RS26555 (HUF09_26570) pilX 5654553..5655140 (-) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  HUF09_RS26560 (HUF09_26575) pilW 5655137..5655961 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  HUF09_RS26565 (HUF09_26580) pilV 5655958..5656515 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  HUF09_RS26570 (HUF09_26585) - 5656506..5657012 (-) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  HUF09_RS26575 (HUF09_26590) - 5657118..5657627 (-) 510 WP_003112829.1 GspH/FimT family pseudopilin -
  HUF09_RS26580 (HUF09_26595) thiO 5657762..5658856 (+) 1095 WP_023089635.1 glycine oxidase ThiO -
  HUF09_RS26585 (HUF09_26600) pilR 5658902..5660239 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=453858 HUF09_RS26565 WP_003119423.1 5655958..5656515(-) (pilV) [Pseudomonas aeruginosa strain DL201330]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=453858 HUF09_RS26565 WP_003119423.1 5655958..5656515(-) (pilV) [Pseudomonas aeruginosa strain DL201330]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995