Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HUB98_RS13825 Genome accession   NZ_CP054614
Coordinates   2983079..2984446 (-) Length   455 a.a.
NCBI ID   WP_110899259.1    Uniprot ID   -
Organism   Paenibacillus barcinonensis strain KACC11450     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2978079..2989446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUB98_RS13795 (HUB98_13795) ispF 2978135..2978611 (-) 477 WP_110899265.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  HUB98_RS13800 (HUB98_13800) ispD 2978608..2979300 (-) 693 WP_110899264.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  HUB98_RS13805 (HUB98_13805) - 2979396..2980481 (-) 1086 WP_110899263.1 PIN/TRAM domain-containing protein -
  HUB98_RS13810 (HUB98_13810) - 2980653..2981048 (+) 396 WP_110899262.1 DUF1573 domain-containing protein -
  HUB98_RS13815 (HUB98_13815) pssA 2981218..2981946 (-) 729 WP_110899261.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  HUB98_RS13820 (HUB98_13820) disA 2981989..2983065 (-) 1077 WP_110899260.1 DNA integrity scanning diadenylate cyclase DisA -
  HUB98_RS13825 (HUB98_13825) radA 2983079..2984446 (-) 1368 WP_110899259.1 DNA repair protein RadA Machinery gene
  HUB98_RS13830 (HUB98_13830) - 2984749..2987211 (-) 2463 WP_110899258.1 ATP-dependent Clp protease ATP-binding subunit -
  HUB98_RS13835 (HUB98_13835) - 2987405..2988475 (-) 1071 WP_110899257.1 protein arginine kinase -
  HUB98_RS13840 (HUB98_13840) - 2988504..2989022 (-) 519 WP_110899256.1 UvrB/UvrC motif-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49574.19 Da        Isoelectric Point: 7.0808

>NTDB_id=453817 HUB98_RS13825 WP_110899259.1 2983079..2984446(-) (radA) [Paenibacillus barcinonensis strain KACC11450]
MAKVKTKFQCTECGYEAPKWYGKCPGCQSWNSMIEETETVVKTQGRNSPLFDSKDKPLPIIDIDSGQEPRVQTGIGELNR
VLGGGIVPGSLVLVGGDPGIGKSTLMLQTSHALTHSGLRVLYVSGEESVKQTKLRADRLGALSPELYVLCETNMERIEEA
VDHIQPHFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEDGLREVGNPSELFLSERPLGVAGSTVVASMEGTRPLLVELQALISTTHFPS
PRRMATGIDHHRLNLIIAVLEKRMGMFLQTQDAYLNVAGGVRLDEPAVDLAVAISIASSLRDVPTKPDDVIFGEIGLTGE
VRAVSRAEQRVKEAAKLGFKRVILPEKSLKGWKHPRGIQLIGVNTVADALAVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=453817 HUB98_RS13825 WP_110899259.1 2983079..2984446(-) (radA) [Paenibacillus barcinonensis strain KACC11450]
GTGGCCAAAGTAAAAACCAAGTTTCAATGTACGGAATGCGGCTATGAAGCCCCCAAATGGTACGGAAAATGTCCTGGTTG
CCAGTCCTGGAATTCAATGATAGAAGAAACCGAAACGGTGGTCAAAACGCAAGGGAGAAATTCTCCTTTGTTTGACAGTA
AAGATAAACCGCTTCCTATCATAGATATAGATAGCGGTCAGGAGCCGCGTGTACAGACTGGAATCGGCGAGCTGAACCGT
GTATTGGGCGGCGGGATTGTGCCAGGTTCACTTGTTCTGGTCGGGGGTGACCCGGGGATCGGGAAATCCACATTAATGCT
ACAGACGTCTCATGCACTGACCCATTCCGGTTTGCGTGTGTTGTATGTATCCGGGGAGGAATCCGTAAAGCAGACGAAGC
TGCGGGCAGATCGTCTGGGTGCGCTCTCGCCGGAGCTGTATGTGCTGTGTGAAACCAATATGGAGCGGATCGAGGAGGCG
GTGGATCATATCCAGCCGCATTTTCTTGTCATCGACTCTATTCAGACGGTATATTTGCCCGAAGTTACCAGCGCACCTGG
AAGTGTAGCTCAGGTAAGGGAATGTACGTCCAGATTTATGCGGATTGCCAAAGGCCGAGGCATTGCAACGGTTCTTGTAG
GGCATGTTACCAAAGAAGGTGCCATCGCCGGCCCCCGCATGCTGGAGCATATGGTGGACTGTGTGCTTTATTTTGAAGGA
GAGCGGCATCATACGTATCGTCTCCTTCGCGCAGTCAAGAATCGTTTTGGTTCCACCAACGAGATTGGCATATTTGAAAT
GGGGGAGGACGGCCTTCGTGAAGTCGGTAATCCCTCGGAATTATTTTTATCGGAGCGTCCGCTTGGGGTAGCGGGTTCTA
CCGTTGTGGCAAGCATGGAGGGCACAAGGCCGTTGCTGGTCGAGCTCCAGGCGTTGATCTCGACGACGCACTTTCCTTCT
CCACGCCGTATGGCAACAGGCATTGATCATCACAGGCTCAATCTGATTATCGCGGTGCTGGAAAAACGTATGGGCATGTT
CCTGCAAACACAGGATGCGTACCTAAACGTGGCGGGCGGGGTAAGACTGGATGAGCCAGCTGTTGATCTGGCAGTAGCCA
TCAGCATTGCCTCCAGCCTTAGAGATGTGCCAACCAAGCCGGATGATGTCATCTTTGGCGAGATTGGCCTGACAGGTGAG
GTTCGTGCCGTATCGCGGGCAGAACAGCGTGTGAAAGAAGCCGCCAAGCTGGGCTTTAAACGAGTTATTTTACCAGAAAA
AAGCTTAAAGGGCTGGAAACATCCTCGCGGGATACAACTGATCGGTGTGAATACCGTGGCAGATGCACTAGCGGTTGCTT
TAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(76-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.157

100

0.666
  radA Streptococcus mitis NCTC 12261

58.667

98.901

0.58
  radA Streptococcus pneumoniae Rx1

58.667

98.901

0.58
  radA Streptococcus pneumoniae D39

58.667

98.901

0.58
  radA Streptococcus pneumoniae R6

58.667

98.901

0.58
  radA Streptococcus pneumoniae TIGR4

58.667

98.901

0.58
  radA Streptococcus mitis SK321

58.667

98.901

0.58