Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I6I02_RS09165 Genome accession   NZ_CP066093
Coordinates   1998697..1999293 (+) Length   198 a.a.
NCBI ID   WP_002886506.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1993697..2004293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS09140 (I6I02_09140) - 1993970..1995970 (-) 2001 WP_198463499.1 cell division site-positioning protein MapZ family protein -
  I6I02_RS09145 (I6I02_09145) - 1995973..1997139 (-) 1167 WP_060972222.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  I6I02_RS09155 (I6I02_09155) gpsB 1997664..1997996 (-) 333 WP_002883687.1 cell division regulator GpsB -
  I6I02_RS09160 (I6I02_09160) - 1998105..1998620 (-) 516 WP_060972199.1 DUF1273 domain-containing protein -
  I6I02_RS09165 (I6I02_09165) recU 1998697..1999293 (+) 597 WP_002886506.1 Holliday junction resolvase RecU Machinery gene
  I6I02_RS09170 (I6I02_09170) pbp1a 1999293..2001584 (+) 2292 WP_060972200.1 penicillin-binding protein PBP1A -
  I6I02_RS09175 (I6I02_09175) pepC 2001688..2003025 (-) 1338 WP_198463500.1 aminopeptidase C -
  I6I02_RS09180 (I6I02_09180) - 2003127..2003570 (-) 444 WP_198463501.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22754.28 Da        Isoelectric Point: 9.9828

>NTDB_id=453812 I6I02_RS09165 WP_002886506.1 1998697..1999293(+) (recU) [Streptococcus salivarius strain FDAARGOS_1045]
MVNYPHQISRKIAQVRPKKSNRVDFANRGMSFESAINATNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHAHQIEHMSQVISQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGYAIAEAAYPQVPYLEIIEKLLGGNT

Nucleotide


Download         Length: 597 bp        

>NTDB_id=453812 I6I02_RS09165 WP_002886506.1 1998697..1999293(+) (recU) [Streptococcus salivarius strain FDAARGOS_1045]
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATAGCACAAGTACGTCCTAAAAAATCAAATAGAGTTGACTTTGCCAA
TCGGGGGATGAGCTTTGAATCTGCTATTAACGCGACTAATGATTACTATTTGTCGCGTGGTTTAGCCGTTATTCATAAAA
AACCTACCCCTGTTCAAATTGTCAAAGTCGATTATCCCAAACGCTCACGGGCAAAGATTGTAGAAGCTTACTTTAGACAA
GCTTCTACTACCGACTACTCCGGCGTTTACAAAGGATACTACATTGATTTTGAAGCCAAAGAGACACGACAAAAGACATC
CATGCCTATGAAAAACTTTCATGCGCATCAAATTGAGCACATGTCTCAGGTCATCAGTCAAGATGGGATCTGCTTCGTGC
TACTTCACTTCTCGACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAGATTGATAAAGGG
ACGAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGCTATGCAATTGCAGAAGCAGCTTATCCTCAAGTTCCTTACTT
AGAAATCATTGAAAAATTATTAGGTGGTAACACATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.246

100

0.515