Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HUB94_RS10045 Genome accession   NZ_CP054612
Coordinates   1800171..1801979 (+) Length   602 a.a.
NCBI ID   WP_245946774.1    Uniprot ID   -
Organism   Paenibacillus cellulosilyticus strain KACC 14175     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1795171..1806979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUB94_RS10025 (HUB94_10055) - 1796637..1797191 (+) 555 WP_174812582.1 MarR family transcriptional regulator -
  HUB94_RS10030 (HUB94_10060) - 1797306..1797488 (+) 183 WP_281272021.1 DUF2798 domain-containing protein -
  HUB94_RS10035 (HUB94_10065) - 1797876..1798286 (+) 411 WP_110045204.1 MarR family transcriptional regulator -
  HUB94_RS10040 (HUB94_10070) rcrP 1798373..1800142 (+) 1770 WP_110045205.1 ABC transporter ATP-binding protein Regulator
  HUB94_RS10045 (HUB94_10075) rcrQ 1800171..1801979 (+) 1809 WP_245946774.1 ABC transporter ATP-binding protein Regulator
  HUB94_RS10050 (HUB94_10080) - 1802195..1802743 (+) 549 WP_110045207.1 OsmC family protein -
  HUB94_RS10055 (HUB94_10085) - 1802787..1804112 (+) 1326 WP_110045208.1 LLM class flavin-dependent oxidoreductase -
  HUB94_RS10060 (HUB94_10090) - 1804541..1805245 (+) 705 WP_110045209.1 hypothetical protein -
  HUB94_RS10065 (HUB94_10095) - 1805558..1805740 (+) 183 WP_281272022.1 DUF2798 domain-containing protein -
  HUB94_RS10070 (HUB94_10100) - 1805887..1806738 (+) 852 WP_110045211.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 66799.59 Da        Isoelectric Point: 6.6390

>NTDB_id=453803 HUB94_RS10045 WP_245946774.1 1800171..1801979(+) (rcrQ) [Paenibacillus cellulosilyticus strain KACC 14175]
MRPPGPPGGGFGPNMGPGQKANNFKGTMKKLVAFCKSYMLFILIALLLAFVGSAFNVYGPHLLSDMTDLIQEGLTASIDL
SAIQRVGFILAALYGLGFIFSYFQGYIMATVTQKITKRMRTELSEKMNRIPLKYFDKTSIGNVLSRITNDIDTIGQTLNN
SLGQLVTSAATFVGVLIMMFYTNWVMALTAIFSTLIGFMLMTVIMKNSQKYFVQQQKQLGDINGHIEEMYAGHQIVKVYN
GEKEAKEKFHAINDRLYDNAWKSQFLSGIMMPIMQFIGNFGYVAVCIVGGLLVTNDVISIGTIVAFMVYIRLFTQPLAQI
AQAATNLQSTAAASERVFEFMEEEELEDETNKSLKVKHVKGDVAFKNVSFGYLDDKLIIKDFSLDVKAGQKIAIVGPTGA
GKTTLVNLLMRFYEINRGEITIDGLPTHQLTREQVHQMFCMVLQDTWLFEGTIRENIIYSKPNVTNEEVVAACKAVGIHH
TIQALPNGYDTVLNDKVNLSVGQKQLVTIARALIENAPMLILDEATSSVDTRTEVQIQQAMDQLMVGKTSFVIAHRLSTI
KNADLILVMKDGDILETGSHEELLAKHGFYADLYNSQFESAS

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=453803 HUB94_RS10045 WP_245946774.1 1800171..1801979(+) (rcrQ) [Paenibacillus cellulosilyticus strain KACC 14175]
ATGAGACCCCCAGGTCCGCCAGGAGGCGGCTTTGGTCCGAATATGGGGCCAGGTCAAAAGGCTAACAACTTTAAAGGAAC
GATGAAGAAGCTAGTCGCTTTCTGTAAATCGTATATGCTTTTTATTCTAATTGCATTACTGCTGGCATTTGTTGGATCCG
CGTTTAACGTTTATGGCCCCCATTTATTAAGCGATATGACAGACCTTATTCAAGAAGGCCTGACGGCATCGATTGATTTG
TCTGCGATTCAGAGGGTCGGCTTCATCTTGGCTGCGCTATATGGCCTAGGCTTCATCTTCAGTTATTTTCAAGGCTACAT
TATGGCGACAGTAACCCAAAAGATTACGAAAAGAATGCGTACCGAATTATCAGAGAAAATGAATCGGATTCCATTGAAAT
ACTTTGATAAAACAAGCATTGGTAATGTATTAAGCCGCATTACAAATGATATTGATACAATCGGTCAAACGTTAAACAAT
AGTTTAGGACAATTGGTTACTTCCGCGGCAACTTTTGTCGGCGTACTGATCATGATGTTCTATACGAACTGGGTCATGGC
TTTAACGGCAATTTTCTCCACGCTGATCGGCTTTATGCTGATGACCGTGATTATGAAGAATTCCCAGAAGTATTTCGTTC
AACAACAGAAACAGCTCGGAGATATTAACGGTCATATTGAAGAAATGTATGCGGGACATCAGATTGTGAAAGTGTACAAC
GGTGAGAAAGAAGCAAAAGAAAAATTCCACGCGATTAATGATCGCCTGTATGACAACGCATGGAAATCGCAGTTTTTATC
CGGTATCATGATGCCGATCATGCAATTTATCGGAAATTTCGGCTATGTTGCGGTATGTATTGTCGGTGGATTGCTTGTGA
CCAATGATGTTATTTCGATCGGTACCATTGTTGCGTTTATGGTCTATATTCGACTATTCACACAACCTCTTGCACAGATC
GCACAAGCAGCGACCAATTTACAATCGACTGCCGCAGCAAGTGAGCGTGTATTTGAATTCATGGAAGAAGAAGAGCTTGA
AGATGAAACGAATAAATCGCTGAAAGTTAAACATGTCAAAGGTGATGTTGCGTTTAAGAACGTGTCGTTCGGTTATCTGG
ATGACAAGCTTATCATTAAAGACTTCTCCTTAGATGTCAAGGCAGGTCAAAAAATTGCGATCGTTGGACCGACAGGAGCC
GGAAAAACGACGCTGGTGAACCTGTTGATGCGATTCTACGAGATCAATCGCGGGGAAATCACGATTGATGGTTTGCCTAC
TCATCAATTAACGCGTGAACAGGTGCATCAAATGTTCTGCATGGTGCTGCAGGATACCTGGCTCTTCGAAGGGACGATTC
GTGAGAATATCATATATTCCAAACCAAATGTGACGAATGAAGAAGTAGTTGCAGCATGTAAAGCGGTTGGTATCCATCAT
ACCATTCAAGCTTTGCCGAACGGTTATGATACGGTTCTGAATGATAAAGTCAATTTGTCTGTCGGGCAGAAGCAGCTTGT
AACGATTGCTCGGGCATTGATTGAGAATGCGCCTATGTTAATACTCGATGAAGCAACAAGCTCTGTTGATACACGAACGG
AAGTGCAGATTCAACAAGCGATGGATCAGTTGATGGTCGGCAAAACCTCGTTCGTCATAGCTCATCGGCTGTCGACCATT
AAGAATGCGGATCTGATTCTGGTCATGAAAGACGGAGATATATTAGAAACCGGAAGCCATGAGGAGCTGCTGGCCAAACA
CGGATTTTATGCCGATCTGTACAACAGCCAATTCGAGTCCGCTTCTTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(42-317)

ABC transporter (ABC_tran)

(380-527)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.019

95.847

0.547